Evidence map›Paper›PMID 12525647›Full record

ArticleJournal of virology2003

Human immunodeficiency virus type 1 Nef-mediated downregulation of CD4 correlates with Nef enhancement of viral pathogenesis.

Cheryl A Stoddart, Romas Geleziunas, Sharon Ferrell, Valerie Linquist-Stepps, Mary E Moreno, Christopher Bare, Weiduan Xu, Wes Yonemoto, Patricia A Bresnahan, Joseph M McCune and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Novel role of HIV-1 Nef in regulating the ubiquitination of cellular proteins.Frontiers in cellular and infection microbiology · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Viral factors in non-progression.Frontiers in immunology · 2013
    Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Cheryl A StoddartGladstone Institute of Virology and Immunology. Departments of Medicine. Microbiology and Immunology, University of California, San Francisco, California 94141, USA.
Romas Geleziunas
Sharon Ferrell
Valerie Linquist-Stepps
Mary E Moreno
Christopher Bare
Weiduan Xu
Wes Yonemoto
Patricia A Bresnahan
Joseph M McCune
Warner C Greene
Institute of Virology of the Slovak Academy of Sciences · SKUniversity of California, San Francisco · US

Funding

Impact of HSV-2 on Female Genital Tract Mucosal Immunity & HIV InfectionR01AI065309 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI HEROLD, BETSY C. · 2005 to 2014
$5.1M
UCSF-GIVI CENTER FOR AIDS RESEARCHP30MH059037 · NIMH · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI JACOBSON, MARK A · 1998 to 2001
$4.9M
TISSUE-BASED SMALL ANIMAL MODEL FOR HIV DRUG DISCOVERYN01AI005418 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI STODDART, CHERYL · 2000 to 2000
$971k
NIAID NIH HHS AI65309NIAID NIH HHS N01 AI005418NIAID NIH HHS R01 AI065309NIMH NIH HHS P30-MH59037
6 · The paper itself

Abstract

The nef gene products encoded by human immunodeficiency virus type 1 (HIV-1) and simian immunodeficiency virus type 1 (SIV-1) increase viral loads in infected hosts and accelerate clinical progression to AIDS. Nef exhibits a spectrum of biological activities, including the ability to downregulate surface expression of CD4 and major histocompatibility complex (MHC) class I antigens, to alter the state of T-cell activation, and to enhance the infectivity of viral particles. To determine which of these in vitro functions most closely correlates with the pathogenic effects of Nef in vivo, we constructed recombinant HIV-1 NL4-3 viruses carrying mutations within the nef gene that selectively impair these functions. These mutant viruses were evaluated for pathogenic potential in severe combined immunodeficiency (SCID) mice implanted with human fetal thymus and liver (SCID-hu Thy/Liv mice), in which virus-mediated depletion of thymocytes is known to be Nef dependent. Disruption of the polyproline type II helix (Pxx)4 within Nef (required for binding of Hck and p21-activated kinase-like kinases, downregulation of MHC class I, and enhancement of HIV-1 infectivity in vitro but dispensable for CD4 downregulation) did not impair thymocyte depletion in virus-infected Thy/Liv human thymus implants. Conversely, three separate point mutations in Nef that compromised its ability to downregulate CD4 attenuated thymocyte depletion while not diminishing viral replication. These findings indicate that the functional ability of Nef to downregulate CD4 and not MHC class I downregulation, Hck or PAK binding, or (Pxx)4-associated enhancement of infectivity most closely correlates with Nef-mediated enhancement of HIV-1 pathogenicity in vivo. Nef-mediated CD4 downregulation merits consideration as a new target for the development of small-molecule inhibitors.

Indexed as

AllelesAnimalsCD4 AntigensCell LineDown-RegulationGene Products, nefHistocompatibility Antigens Class IHIV-1HumansMiceMice, SCIDnef Gene Products, Human Immunodeficiency VirusCD4 AntigensGene Products, nefHistocompatibility Antigens Class Inef Gene Products, Human Immunodeficiency Virus

Identifiers

PMID12525647
PMCPMC140869
OpenAlexW2020203581

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.