Evidence map›Paper›PMID 12524365›Full record

ArticleGenetics2002

A cluster of four receptor-like genes resides in the Vf locus that confers resistance to apple scab disease.

Mingliang Xu, Schuyler S Korban

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
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  6. Characterisation of barley resistance to rhynchosporium on chromosome 6HS.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
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  19. Identification of functional apple scab resistance gene promoters.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005
    Article
  20. The HcrVf2 gene from a wild apple confers scab resistance to a transgenic cultivated variety.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Mingliang XuDepartment of Natural Resources and Environmental Sciences, University of Illinois, Urbana, Illinois 61801, USA.
Schuyler S Korban
Illinois Department of Natural Resources · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Vf locus, derived from the crabapple species Malus floribunda 821, confers resistance to five races of the fungal pathogen Venturia inaequalis, the causal agent of apple scab disease. In our previous research, the Vf locus was restricted to a BAC contig of approximately 290 kb covered by five overlapping BAC clones. Here, we report on cloning of the resistance gene(s) present in the Vf BAC contig using a highly reliable and straightforward approach. This approach relies on hybridization of labeled cDNAs to amplified inserts of subclones derived from BAC inserts, followed by recovery of full-size transcripts by rapid amplification of cDNA ends (RACE). A cluster of four resistance paralogs (Vfa1, Vfa2, Vfa3, and Vfa4) was identified in the Vf locus. Vfa1, Vfa2 and Vfa4 had no introns and are predicted to encode proteins characterized with extracellular leucine-rich repeats (LRRs) and transmembrane (TM) domains. However, Vfa3 contains an insertion of 780 bp at the end of the LRR motif, resulting in multiple truncated transcripts. Comparison of Vfa1, Vfa2, and Vfa4 paralogs revealed a high degree of overall homology in their deduced amino acid sequences, while divergences were mainly restricted within LRR domains, including variable LRR units, numerous amino acid substitutions, and several residue deletions/duplications. Differential expression profiles among the four paralogs were observed during leaf development. Vfa1, Vfa2, and Vfa3 were active in immature leaves, but slightly expressed in mature leaves, while Vfa4 was active in immature leaves and was highly expressed in mature leaves.

Indexed as

Genes, PlantMultigene FamilyAmino Acid SequenceAscomycotaBase SequenceChromosomes, Artificial, BacterialDNA, ComplementaryDNA, PlantDNA PrimersGene ExpressionMalusMolecular Sequence DataPlant DiseasesPlant ProteinsPromoter Regions, GeneticSequence Homology, Amino AcidDNA, ComplementaryDNA, PlantDNA PrimersPlant Proteins

Identifiers

PMID12524365
PMCPMC1462389
OpenAlexW1923663269

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.