ArticleBiophysical journal2003
Universality classes in folding times of proteins.
Article in Biophysical journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed.
- Searching the Optimal Folding Routes of a Complex Lasso Protein.Biophysical journal · 2019Article
- New views on phototransduction from atomic force microscopy and single molecule force spectroscopy on native rods.Scientific reports · 2017Article
- Evidence for the principle of minimal frustration in the evolution of protein folding landscapes.Proceedings of the National Academy of Sciences of the United States of America · 2017Article
- Topological transformations in proteins: effects of heating and proximity of an interface.Scientific reports · 2017Article
- An Exploration of the Universe of Polyglutamine Structures.PLoS computational biology · 2015Article
- A theoretical study of the unfolding pathway of reduced human serum albumin.Journal of molecular modeling · 2015Article
- Protein unfolding by biological unfoldases: insights from modeling.Biophysical journal · 2014Article
- Basis for a neuronal version of Grover's quantum algorithm.Frontiers in molecular neuroscience · 2014Article
- Nanoindentation of 35 virus capsids in a molecular model: relating mechanical properties to structure.PloS one · 2013Article
- Inferring the rate-length law of protein folding.PloS one · 2013Article
- Dynamic prestress in a globular protein.PLoS computational biology · 2012Article
- BSDB: the biomolecule stretching database.Nucleic acids research · 2011Article
- Anharmonic normal mode analysis of elastic network model improves the modeling of atomic fluctuations in protein crystal structures.Biophysical journal · 2010Article
- A Stevedore's protein knot.PLoS computational biology · 2010Article
- Mechanical strength of 17,134 model proteins and cysteine slipknots.PLoS computational biology · 2009Article
- Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model.BMC structural biology · 2009Article
- Dodging the crisis of folding proteins with knots.Proceedings of the National Academy of Sciences of the United States of America · 2009Article
- Insights from coarse-grained Gō models for protein folding and dynamics.International journal of molecular sciences · 2009Review
- What have we learned from the studies of two-state folders, and what are the unanswered questions about two-state protein folding?Physical biology · 2009Article
- Selection of optimal variants of Gō-like models of proteins through studies of stretching.Biophysical journal · 2008Article
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2 authors.
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Abstract
Molecular dynamics simulations in simplified models allow one to study the scaling properties of folding times for many proteins together under a controlled setting. We consider three variants of the Go models with different contact potentials and demonstrate scaling described by power laws and no correlation with the relative contact order parameter. We demonstrate existence of at least three kinetic universality classes that are correlated with the types of structure: the alpha-, alpha-beta-, and beta- proteins have the scaling exponents of approximately 1.7, 2.5, and 3.2, respectively. The three classes merge into one when the contact range is truncated at a reasonable value. We elucidate the role of the potential associated with the chirality of a protein.
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