Evidence map›Paper›PMID 12522270›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry.

Arthur R Salomon, Scott B Ficarro, Laurence M Brill, Achim Brinker, Qui T Phung, Christer Ericson, Karsten Sauer, Ansgar Brock, David M Horn, Peter G Schultz and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
18.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 277 citations in OpenAlex.

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  12. Quantitative Phosphoproteomic Analysis of T-Cell Receptor Signaling.Methods in molecular biology (Clifton, N.J.) · 2017
    Article
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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Arthur R SalomonGenomics Institute of the Novartis Research Foundation, 10675 John Jay Hopkins Drive, San Diego, CA 92121, USA.
Scott B Ficarro
Laurence M Brill
Achim Brinker
Qui T Phung
Christer Ericson
Karsten Sauer
Ansgar Brock
David M Horn
Peter G Schultz
Eric C Peters
Genomics Institute of the Novartis Research Foundation · USScripps Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The reversible phosphorylation of tyrosine residues is an important mechanism for modulating biological processes such as cellular signaling, differentiation, and growth, and if deregulated, can result in various types of cancer. Therefore, an understanding of these dynamic cellular processes at the molecular level requires the ability to assess changes in the sites of tyrosine phosphorylation across numerous proteins simultaneously as well as over time. Here we describe a sensitive approach based on multidimensional liquid chromatography/mass spectrometry that enables the rapid identification of numerous sites of tyrosine phosphorylation on a number of different proteins from human whole cell lysates. We used this methodology to follow changes in tyrosine phosphorylation patterns that occur over time during either the activation of human T cells or the inhibition of the oncogenic BCR-ABL fusion product in chronic myelogenous leukemia cells in response to treatment with STI571 (Gleevec). Together, these experiments rapidly identified 64 unique sites of tyrosine phosphorylation on 32 different proteins. Half of these sites have been documented in the literature, validating the merits of our approach, whereas motif analysis suggests that a number of the undocumented sites are also potentially involved in biological pathways. This methodology should enable the rapid generation of new insights into signaling pathways as they occur in states of health and disease.

Indexed as

Mass SpectrometryAmino Acid SequenceBenzamidesChromatography, High Pressure LiquidFusion Proteins, bcr-ablHumansImatinib MesylateJurkat CellsMolecular Sequence DataPhosphorylationPiperazinesProtein-Tyrosine KinasesPyrimidinesTyrosineZAP-70 Protein-Tyrosine KinaseBenzamidesFusion Proteins, bcr-ablImatinib MesylatePiperazinesProtein-Tyrosine KinasesPyrimidinesTyrosineZAP70 protein, humanZAP-70 Protein-Tyrosine Kinase

Identifiers

PMID12522270
PMCPMC141014
OpenAlexW2126910411

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.