ArticleNucleic acids research2003
OGRe: a relational database for comparative analysis of mitochondrial genomes.
Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed.
- Complete Mitogenome ofJournal of nematology · 2022Article
- Unorthodox features in two venerid bivalves with doubly uniparental inheritance of mitochondria.Scientific reports · 2020Article
- Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes.Nucleic acids research · 2019Article
- Total evidence phylogeny and evolutionary timescale for Australian faunivorous marsupials (Dasyuromorphia).BMC evolutionary biology · 2017Article
- Burrowers from the Past: Mitochondrial Signatures of Ordovician Bivalve Infaunalization.Genome biology and evolution · 2017Article
- Annotated mitochondrial genome with Nanopore R9 signal forF1000Research · 2017Article
- Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding.Molecular ecology resources · 2016Article
- Bears in a forest of gene trees: phylogenetic inference is complicated by incomplete lineage sorting and gene flow.Molecular biology and evolution · 2014Article
- Analyses of mitochondrial amino acid sequence datasets support the proposal that specimens of Hypodontus macropi from three species of macropodid hosts represent distinct species.BMC evolutionary biology · 2013Article
- Afrobatrachian mitochondrial genomes: genome reorganization, gene rearrangement mechanisms, and evolutionary trends of duplicated and rearranged genes.BMC genomics · 2013Article
- The mitochondrial genome of Protostrongylus rufescens - implications for population and systematic studies.Parasites & vectors · 2013Article
- Article
- LCGbase: A Comprehensive Database for Lineage-Based Co-regulated Genes.Evolutionary bioinformatics online · 2012Article
- MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.Nucleic acids research · 2012Article
- Mitochondrial genome sequence of Unionicola parkeri (Acari: Trombidiformes: Unionicolidae): molecular synapomorphies between closely-related Unionicola gill mites.Experimental & applied acarology · 2011Article
- The phylogenetic position of Acoela as revealed by the complete mitochondrial genome of Symsagittifera roscoffensis.BMC evolutionary biology · 2010Article
- Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA.BMC evolutionary biology · 2010Article
- An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes.Nucleic acids research · 2010Article
- Mitochondrial genome sequence of Unionicola foili (Acari: Unionicolidae): a unique gene order with implications for phylogenetic inference.Experimental & applied acarology · 2009Article
- Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny.BMC genomics · 2009Article
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4 authors.
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Abstract
Organellar Genome Retrieval (OGRe) is a relational database of complete mitochondrial genome sequences for over 250 Metazoan species. OGRe provides a resource for the comparative analysis of mitochondrial genomes at several levels. At the sequence level, OGRe allows the retrieval of any selected set of mitochondrial genes from any selected set of species. Species are classified using a taxonomic system that allows easy selection of related groups of species. Sequence alignments are also available for some species. At the level of individual nucleotides, the system contains information on base frequencies and codon usage frequencies that can be compared between organisms. At the level of whole genomes, OGRe provides several ways of visualizing information on gene order. Diagrams illustrating the genome arrangement can be generated for any selected set of species automatically from the information in the database. Searches can be done based on gene arrangement to find sets of species that have the same order as one another. Diagrams for pairwise comparison of species can be produced that show the positions of break-points in the gene order and use colour to highlight the sections of the genome that have moved. OGRe is available from http://www.bioinf.man.ac.uk/ogre.
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