ArticleNucleic acids research2003
MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptome.
Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 71 citations in OpenAlex.
- LDRGDb - Legumes disease resistance genes database.Frontiers in plant science · 2023Article
- Spatio-temporal expression patterns of Arabidopsis thaliana and Medicago truncatula defensin-like genes.PloS one · 2013Article
- Comparative genomic sequence and expression analyses of Medicago truncatula and alfalfa subspecies falcata COLD-ACCLIMATION-SPECIFIC genes.Plant physiology · 2008Article
- Integrated pest management: the push-pull approach for controlling insect pests and weeds of cereals, and its potential for other agricultural systems including animal husbandry.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2008Review
- Recent Advances in Medicago truncatula Genomics.International journal of plant genomics · 2008Article
- PeanutMap: an online genome database for comparative molecular maps of peanut.BMC bioinformatics · 2006Article
- Article
- Transcript analysis of early nodulation events in Medicago truncatula.Plant physiology · 2006Article
- Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters.BMC genomics · 2005Article
- Article
- Computational identification of 69 retroposons in Arabidopsis.Plant physiology · 2005Article
- Review
- Databases and information integration for the Medicago truncatula genome and transcriptome.Plant physiology · 2005Article
- Structure and development of Medicago truncatula pod wall and seed coat.Annals of botany · 2005Article
- Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics.Plant physiology · 2005Article
- Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program.Plant physiology · 2004Article
- Computational identification and characterization of novel genes from legumes.Plant physiology · 2004Article
- High rooting frequency and functional analysis of GUS and GFP expression in transgenic Medicago truncatula A17.The New phytologist · 2004Article
- Evolution and microsynteny of the apyrase gene family in three legume genomes.Molecular genetics and genomics : MGG · 2003Article
- Functional genomics of wood quality and properties.Genomics, proteomics & bioinformatics · 2003Review
Corrections and comments
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Authors and funding
13 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In order to identify the genes and gene functions that underlie key aspects of legume biology, researchers have selected the cool season legume Medicago truncatula (Mt) as a model system for legume research. A set of >170 000 Mt ESTs has been assembled based on in-depth sampling from various developmental stages and pathogen-challenged tissues. MtDB is a relational database that integrates Mt transcriptome data and provides a wide range of user-defined data mining options. The database is interrogated through a series of interfaces with 58 options grouped into two filters. In addition, the user can select and compare unigene sets generated by different assemblers: Phrap, Cap3 and Cap4. Sequence identifiers from all public Mt sites (e.g. IDs from GenBank, CCGB, TIGR, NCGR, INRA) are fully cross-referenced to facilitate comparisons between different sites, and hypertext links to the appropriate database records are provided for all queries' results. MtDB's goal is to provide researchers with the means to quickly and independently identify sequences that match specific research interests based on user-defined criteria. The underlying database and query software have been designed for ease of updates and portability to other model organisms. Public access to the database is at http://www.medicago.org/MtDB.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.