Evidence map›Paper›PMID 12514139›Full record

ArticleThe EMBO journal2003

Arabidopsis TOBAMOVIRUS MULTIPLICATION (TOM) 2 locus encodes a transmembrane protein that interacts with TOM1.

Yayoi Tsujimoto, Takuro Numaga, Kiyoshi Ohshima, Masa-Aki Yano, Ryuji Ohsawa, Derek B Goto, Satoshi Naito, Masayuki Ishikawa

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 123 citations in OpenAlex.

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  15. The Plant Cellular Systems for Plant Virus Movement.The plant pathology journal · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yayoi TsujimotoDivision of Applied Bioscience, Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589 and CREST, Japan.
Takuro Numaga
Kiyoshi Ohshima
Masa-Aki Yano
Ryuji Ohsawa
Derek B Goto
Satoshi Naito
Masayuki Ishikawa
Japan Science and Technology Agency · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The tom2-1 mutation of Arabidopsis thaliana reduces the efficiency of intracellular multiplication of tobamoviruses. The tom2-1 mutant was derived from fast-neutron-irradiated seeds, and the original mutant line also carries ttm1, a dominant modifier that increases tobamovirus multiplication efficiency in a tobamovirus-strain-specific manner in the tom2-1 genetic background. Here, we show that the tom2-1 mutation involved a deletion of approximately 20 kb in the nuclear genome. The deleted region included two genes named TOM2A and TOM2B that were both associated with the tom2-1 phenotype, whereas ttm1 corresponded to the translocation of part of the deleted region that included intact TOM2B but not TOM2A. TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, while TOM2B encodes a 122 amino acid basic protein. The split-ubiquitin assay demonstrated an interaction of TOM2A both with itself and with TOM1, an integral membrane protein of A.thaliana presumed to be an essential constituent of tobamovirus replication complex. The data presented here suggest that TOM2A is also an integral part of the tobamovirus replication complex.

Indexed as

Genes, PlantMutationAmino Acid SequenceArabidopsisArabidopsis ProteinsCarrier ProteinsChromosome MappingChromosomes, PlantGenetic Complementation TestMembrane ProteinsMolecular Sequence DataOpen Reading FramesRecombinant Fusion ProteinsSeedsTobamovirusUbiquitinArabidopsis ProteinsCarrier ProteinsMembrane ProteinsRecombinant Fusion ProteinsTOM1 protein, ArabidopsisTOM2 protein, ArabidopsisUbiquitinViral Proteins

Identifiers

PMID12514139
PMCPMC140109
OpenAlexW2005466661

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.