Evidence map›Paper›PMID 12514097›Full record

ArticleGenes & development2003

Pax5 is required for recombination of transcribed, acetylated, 5' IgH V gene segments.

David G T Hesslein, David L Pflugh, Dipanjan Chowdhury, Alfred L M Bothwell, Ranjan Sen, David G Schatz

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 169 citations in OpenAlex.

  1. Article
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  5. Review
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  9. Review
  10. Frontiers in oncology · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Genome Topology Control of Antigen Receptor Gene Assembly.Journal of immunology (Baltimore, Md. : 1950) · 2020
    Review
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

David G T HessleinDepartment of Cell Biology, Yale University School of Medicine, New Haven, Connecticut 06520-8011, USA.
David L Pflugh
Dipanjan Chowdhury
Alfred L M Bothwell
Ranjan Sen
David G Schatz
Howard Hughes Medical Institute · USYale University · US

Funding

INTERDISCIPLINARY IMMUNOLOGY TRAINING PROGRAMT32AI007019 · NIAID · YALE UNIVERSITY · PI Carrie L. Lucas, David G. Schatz · 1985 to 2026
$14.4M
Mechanism and Targeting of V(D)J RecombinationR01AI032524 · NIAID · YALE UNIVERSITY · PI David G. Schatz · 1992 to 2026
$6.7M
Immunoglobulin and T Cell Receptor Gene AssemblyR37AI032524 · NIAID · YALE UNIVERSITY · PI SCHATZ, DAVID G. · 2007 to 2016
$3.5M
LY6 MULTIGENE FAMILYR01GM040924 · NIGMS · YALE UNIVERSITY · PI BOTHWELL, ALFRED LM · 1989 to 2004
$1.4M
REGULATION OF IMMUNOGLOBULIN GENE EXPRESSION IN B CELLSR01GM038925 · NIGMS · BRANDEIS UNIVERSITY · PI REN, RUIBAO · 1992 to 2003
$1.2M
Activation and Inactivation of Immunoglubulin VH GenesR21AI051480 · NIAID · BRANDEIS UNIVERSITY · PI SEN, RANJAN · 2002 to 2002
$338k
FACTORS REGULATING IG GENE EXPRESSION IN B-CELLSR29GM038925 · NIGMS · BRANDEIS UNIVERSITY · PI SEN, RANJAN · 1987 to 1991
–
NIAID NIH HHS AI07019NIAID NIH HHS AI32524NIAID NIH HHS AI51480NIAID NIH HHS R01 AI032524NIAID NIH HHS R37 AI032524NIAID NIH HHS T32 AI007019NIGMS NIH HHS GM38925NIGMS NIH HHS GM40924NIGMS NIH HHS R01 GM038925NIGMS NIH HHS R01 GM040924
6 · The paper itself

Abstract

Pax5-deficient progenitor B (pro-B) cells are thought to be severely defective for recombination of all immunoglobulin heavy chain (IgH) V gene segments, but the mechanism by which Pax5 regulates this process has not been defined. To address this issue, we have examined the assembly of the IgH locus in Pax5-deficient pro-B cells and find, unexpectedly, that 3' IgH V gene segments, which lie closest to the D-J-Cmu region, recombine efficiently, but progressively more distal V gene segments recombine progressively less efficiently. Histone acetylation and germ-line transcription correlate strongly with an open or an accessible chromatin structure thought to be permissive for V(D)J recombination, and defects in recombination are typically accompanied by deficits in these processes. We were therefore surprised to observe that distal V(H) gene segments in Pax5-/- pro-B cells exhibit no defect in these measures of accessibility. The finding of transcribed, histone acetylated gene segments that fail to recombine suggests that a Pax5-dependent regulatory mechanism is required in addition to standard constraints of accessibility to control V(H) gene recombination.

Indexed as

Genes, ImmunoglobulinAcetylationAllelesAnimalsB-LymphocytesChromatinDNA-Binding ProteinsDNA NucleotidyltransferasesGene Rearrangement, B-Lymphocyte, Heavy ChainGenes, RAG-1HistonesHomeodomain ProteinsImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionMiceMice, Inbred C57BLChromatinDNA-Binding ProteinsDNA NucleotidyltransferasesHistonesHomeodomain ProteinsImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionPax5 protein, mousePAX5 Transcription FactorRAG-1 proteinTranscription FactorsVDJ Recombinases

Identifiers

PMID12514097
PMCPMC195966
OpenAlexW2026602476

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.