Evidence map›Paper›PMID 12511502›Full record

ArticleJournal of bacteriology2003

Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar typhimurium DNA microarray.

Kaman Chan, Stephen Baker, Charles C Kim, Corrella S Detweiler, Gordon Dougan, Stanley Falkow

Open access · greenAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of bacteriology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
34.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 215 citations in OpenAlex.

  1. Article
  2. Article
  3. Non-typhoidalJAC-antimicrobial resistance · 2024
    Review
  4. Non-typhoidalFrontiers in veterinary science · 2024
    Article
  5. Article
  6. Article
  7. Analysis of Antimicrobial Resistance in Non-typhoidalFrontiers in veterinary science · 2022
    Article
  8. Virulence and antimicrobial resistance factors inFrontiers in veterinary science · 2022
    Article
  9. Phylogeny ofMicrobial genomics · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. A simplified multiplex PCR-based typing method for commonThe Indian journal of medical research · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Kaman ChanDepartment of Microbiology and Immunology, Stanford University School of Medicine, California 94305-5124, USA. kchan47@stanford.edu
Stephen Baker
Charles C Kim
Corrella S Detweiler
Gordon Dougan
Stanley Falkow
Stanford University · USImperial College London · GB

Funding

Proteomics/GenomicsP30DK056339 · NIDDK · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2001 to 2010
$10.4M
GENETIC AND MOLECULAR BASIS OF BACTERIAL INVASTIONR01AI026195 · NIAID · STANFORD UNIVERSITY · PI FALKOW, STANLEY · 1988 to 2007
$2.8M
NIAID NIH HHS AI26195NIAID NIH HHS R01 AI026195NIDDK NIH HHS DK56339NIDDK NIH HHS P30 DK056339Wellcome Trust
6 · The paper itself

Abstract

The genus Salmonella consists of over 2,200 serovars that differ in their host range and ability to cause disease despite their close genetic relatedness. The genetic factors that influence each serovar's level of host adaptation, how they evolved or were acquired, their influence on the evolution of each serovar, and the phylogenic relationships between the serovars are of great interest as they provide insight into the mechanisms behind these differences in host range and disease progression. We have used an Salmonella enterica serovar Typhimurium spotted DNA microarray to perform genomic hybridizations of various serovars and strains of both S. enterica (subspecies I and IIIa) and Salmonella bongori to gain insight into the genetic organization of the serovars. Our results are generally consistent with previously published DNA association and multilocus enzyme electrophoresis data. Our findings also reveal novel information. We observe a more distant relationship of serovar Arizona (subspecies IIIa) from the subspecies I serovars than previously measured. We also observe variability in the Arizona SPI-2 pathogenicity island, indicating that it has evolved in a manner distinct from the other serovars. In addition, we identify shared genetic features of S. enterica serovars Typhi, Paratyphi A, and Sendai that parallel their unique ability to cause enteric fever in humans. Therefore, whereas the taxonomic organization of Salmonella into serogroups provides a good first approximation of genetic relatedness, we show that it does not account for genomic changes that contribute to a serovar's degree of host adaptation.

Indexed as

Genome, BacterialBacterial ProteinsHumansNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisSalmonellaSalmonella entericaSalmonella typhimuriumSensitivity and SpecificitySerotypingBacterial Proteins

Identifiers

PMID12511502
PMCPMC145314
OpenAlexW2169135562

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.