Evidence map›Paper›PMID 12509460›Full record

ArticleMolecular and cellular biology2003

The tor pathway regulates gene expression by linking nutrient sensing to histone acetylation.

John R Rohde, Maria E Cardenas

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 154 citations in OpenAlex.

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  11. Adaptive responses toProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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  16. Epigenetic changes during aging and their reprogramming potential.Critical reviews in biochemistry and molecular biology · 2019
    Review
  17. Nutrient and Stress Sensing in Pathogenic Yeasts.Frontiers in microbiology · 2019
    Review
  18. Review
  19. Article
  20. Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

John R RohdeDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710, USA.
Maria E Cardenas
Duke University · US

Funding

Function of the rapamycin targets: The TOR kinasesK22CA094925 · NCI · DUKE UNIVERSITY · PI CARDENAS-CORONA, MARIA E · 2002 to 2004
$458k
NCI NIH HHS K22 CA094925NCI NIH HHS K22 CA94925-01
6 · The paper itself

Abstract

The Tor pathway mediates cell growth in response to nutrient availability, in part by inducing ribosomal protein (RP) gene expression via an unknown mechanism. Expression of RP genes coincides with recruitment of the Esa1 histone acetylase to RP gene promoters. We show that inhibition of Tor with rapamycin releases Esa1 from RP gene promoters and leads to histone H4 deacetylation without affecting promoter occupancy by Rap1 and Abf1. Genetic and biochemical evidence identifies Rpd3 as the major histone deacetylase responsible for reversing histone H4 acetylation at RP gene promoters in response to Tor inhibition by rapamycin or nutrient limitation. Our results illustrate that the Tor pathway links nutrient sensing with histone acetylation to control RP gene expression and cell growth.

Indexed as

Gene Expression Regulation, FungalAcetylationAntifungal AgentsBlotting, NorthernBlotting, WesternChromatinCross-Linking ReagentsDNA-Binding ProteinsHistone DeacetylasesHistonesModels, GeneticPhosphatidylinositol 3-KinasesPhosphotransferases (Alcohol Group Acceptor)Precipitin TestsPromoter Regions, GeneticProtein BindingABF1 protein, S cerevisiaeAntifungal AgentsChromatinCross-Linking ReagentsDNA-Binding ProteinsHistone DeacetylasesHistonesPhosphatidylinositol 3-KinasesPhosphotransferases (Alcohol Group Acceptor)RAP1 protein, S cerevisiaeRPD3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsShelterin ComplexSirolimusTelomere-Binding ProteinsTOR1 protein, S cerevisiaeTranscription Factors

Identifiers

PMID12509460
PMCPMC151550
OpenAlexW2131448300

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.