ArticleAnnals of botany2003
Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in Arabidopsis.
Article in Annals of botany, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed, 61 citations in OpenAlex.
- Regulation of root growth and elongation in wheat.Frontiers in plant science · 2024Review
- An enhancer trap system to track developmental dynamics in Marchantia polymorpha.The Plant journal : for cell and molecular biology · 2023Article
- Hypoxia enhances lignification and affects the anatomical structure in hydroponic cultivation of carrot taproot.Plant cell reports · 2018Article
- Physiological and de novo transcriptome analysis of the fermentation mechanism of Cerasus sachalinensis roots in response to short-term waterlogging.BMC genomics · 2017Article
- Transcriptome Analysis of Gene Expression during Chinese Water Chestnut Storage Organ Formation.PloS one · 2016Article
- Mentha arvensis exhibit better adaptive characters in contrast to Mentha piperita when subjugated to sustained waterlogging stress.Protoplasma · 2014Article
- Ethylene promotes induction of aerenchyma formation and ethanolic fermentation in waterlogged roots of Dendranthema spp.Molecular biology reports · 2013Article
- Genome-Wide Analysis of Differentially Expressed Genes Relevant to Rhizome Formation in Lotus Root (Nelumbo nucifera Gaertn).PloS one · 2013Article
- Identification of transcriptome induced in roots of maize seedlings at the late stage of waterlogging.BMC plant biology · 2010Article
- Prolyl-4-hydroxylase (AtP4H1) mediates and mimics low oxygen response in Arabidopsis thaliana.Functional & integrative genomics · 2009Article
- The infective cycle of Cabbage leaf curl virus (CaLCuV) is affected by CRUMPLED LEAF (CRL) gene in Arabidopsis thaliana.Virology journal · 2009Article
- GAL4 GFP enhancer trap lines for analysis of stomatal guard cell development and gene expression.Journal of experimental botany · 2009Article
- Mapping of QTL associated with waterlogging tolerance during the seedling stage in maize.Annals of botany · 2007Article
- A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice.The Plant cell · 2006Article
- Glutathione homeostasis and redox-regulation by sulfhydryl groups.Photosynthesis research · 2005Review
- The use of microarrays to study the anaerobic response in Arabidopsis.Annals of botany · 2005Article
- Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation.Annals of botany · 2005Article
- Sensing and signalling in response to oxygen deprivation in plants and other organisms.Annals of botany · 2005Review
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Transposon tagging with modified maize Ds-GUS constructs was used to isolate genes induced by oxygen deprivation in Arabidopsis thaliana. Seedlings of 800 gene-trap (DsG) and 600 enhancer-trap (DsE) lines were grown on vertically positioned plates for 1 week, oxygen deprived for up to 24 h and stained for GUS activity. Oxygen deprivation induced intricate patterns of gene expression in seedlings of 65 lines. The insertion site and phenotypes of 15 lines were examined. Surprisingly, none of the insertions were into genes that encode known anaerobic polypeptides. Insertions were identified within or adjacent to genes encoding proteins of regulatory, enzymatic, mitochondrial protein import and unknown function, as well as adjacent to genes encoding a putative receptor-like kinase and putative sensor-histidine kinase. Four lines had significantly lower ADH activity after 24 h of oxygen deprivation and three of these showed reduced stress tolerance. Two lines with wild-type levels of ADH were low-oxygen intolerant. Paradoxically, several lines had significantly higher ADH activity after 12 h of oxygen deprivation but reduced stress tolerance. Caffeine treatment, which increased ADH specific activity in wild-type seedlings under aerobic conditions, was sufficient to increase GUS staining in seven of the 15 lines, providing evidence that these genes may be regulated by cytosolic calcium levels. These results demonstrate the effectiveness of the Ds-GUS tagging system in the identification of genes that are regulated in response to oxygen deprivation and a calcium second messenger.
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