Evidence map›Paper›PMID 12508345›Full record

ArticleWorld journal of gastroenterology2003

Silencing-specific methylation and single nucleotide polymorphism of hMLH1 promoter in gastric carcinomas.

Da-Jun Deng, Jin Zhou, Bu-Dong Zhu, Jia-Fu Ji, Jeffrey C Harper, Steven M Powell

Open access · hybridAbstract read
In one paragraph

Article in World journal of gastroenterology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Da-Jun DengPeking University Health Science Center and Beijing Institute for Cancer Research, Beijing, 100034, China. dengdajun@sina.com
Jin Zhou
Bu-Dong Zhu
Jia-Fu Ji
Jeffrey C Harper
Steven M Powell
Peking University · CN

Funding

GENETIC ALTERATIONS IN GASTRIC CARCINOMASR01CA067900 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI POWELL, STEVEN M · 2000 to 2004
$1.3M
GENETIC ALTERATIONS IN GASTRIC CARCINOMASR29CA067900 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI POWELL, STEVEN M · 1995 to 1999
–
NCI NIH HHS CA67900NCI NIH HHS R01 CA067900NCI NIH HHS R29 CA067900
6 · The paper itself

Abstract

aimTo investigate CpG methylation and single nucleotide polymorphism (SNP) of a specific promoter region of hMLH1 in primary gastric carcinoma.

methodsPrimary gastric carcinomas (n=80), their corresponding normal mucosal samples, and gastric mucosal biopsies from normal/gastritis control patients (n=54) were used. Hypermethylation at -253 nt and -251 nt in relation with the translational start site and SNP of a silencing specific region (-339 nt-46 nt) in the hMLH1 promoter were analyzed by Bst UI-combined bisulfite assay (COBRA), denaturing high performance liquid chromatogram (DHPLC), and sequencing.

results(A) The specific methylation at -253 nt and -251 nt was observed in 2 of 60 primary gastric carcinomas, but neither in all of the corresponding mucosa nor in normal/gastritis samples, by Bst UI-COBRA and DHPLC. (B) The hMLH1 promoter was methylated homogeneously in the xenograft of the primary gastric carcinoma with the methylated and unmethylated hMLH1. (C) The pattern of SNP at -93 nt of the hMLH1 promoter in 54 Chinese patients with gastric carcinoma was the same as that in the control patients: 51 % was A/G heteroalleles, 34 % and 15 % were A/A and G/G homoalleles, respectively.

conclusionBiallelic inactivation of hMLH1 by epigenetic silencing existed in human primary gastric carcinoma homogeneously. Hypermethylation of hMLH1 may play a role in the early stage of development of a few gastric carcinomas. The SNP at -93 nt is not related to the susceptibility of gastric carcinomas.

Indexed as

Gene SilencingPolymorphism, Single NucleotidePromoter Regions, GeneticAdaptor Proteins, Signal TransducingAdultAgedAged, 80 and overCarcinomaCarrier ProteinsCpG IslandsDNA RepairFemaleHumansMaleMethylationMiddle AgedAdaptor Proteins, Signal TransducingCarrier ProteinsMLH1 protein, humanMutL Protein Homolog 1Neoplasm ProteinsNuclear ProteinsSulfites

Identifiers

PMID12508345
PMCPMC4728242
OpenAlexW1576146981

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.