Evidence map›Paper›PMID 12496148›Full record

ArticleInfection and immunity2003

Diversity at the locus associated with transcription of a variable surface antigen of Pneumocystis carinii as an index of population structure and dynamics in infected rats.

Scott P Keely, Melanie T Cushion, James R Stringer

Abstract read
In one paragraph

Article in Infection and immunity, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Axenic Long-Term Cultivation ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  2. RNA Polymerase II Transcription inInternational journal of molecular sciences · 2022
    Article
  3. Review
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  13. Bottleneck-mediated quasispecies restriction during spread of an RNA virus from inoculation site to brain.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Scott P KeelyDepartment of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati College of Medicine, Cincinnati, Ohio 45267-0524, USA.
Melanie T Cushion
James R Stringer
Laboratory of Molecular Genetics · PLUniversity of Cincinnati Medical Center · US

Funding

STRUCTURE AND EXPRESSION OF PNEUMOCYSTIS ANTIGEN GENESR01AI036701 · NIAID · UNIVERSITY OF CINCINNATI · PI STRINGER, JAMES RICHARD · 1995 to 2009
$2.9M
TRANSMISSION OF PNEUMOCYSTIS INFECTIONR01AI029839 · NIAID · UNIVERSITY OF CINCINNATI · PI CUSHION, MELANIE T · 1991 to 2001
$445k
NIAID NIH HHS R01 AI036701NIAID NIH HHS R01AI29839NIAID NIH HHS R01AI36701
6 · The paper itself

Abstract

Pneumocystis carinii expresses a surface glycoprotein called MSG. Different isoforms of MSG are encoded by a gene family spread over at least 15 telomeric sites. Only one locus, called UCS, supports the production of MSG mRNA. Previous studies showed that P. carinii populations from individual rats exhibited high degrees of diversity with respect to the MSG genes attached to the UCS locus. This diversity could have been generated primarily in the rats studied. Alternatively, the rats may have been infected by P. carinii organisms that were already different at the UCS locus. To investigate this issue, we examined the UCS locus in P. carinii from rats that had been exposed to few of the microbes at a specified time, which produced a bottleneck in the microbial population. Some of the rats with bottlenecks produced P. carinii populations in which a single MSG sequence resided at the UCS locus in 80 to 90% of the organisms, showing that P. carinii can proliferate within a rat without generating the very high levels of UCS diversity previously seen. From the degree of diversity observed in the bottlenecked populations, the maximum rate of switching appeared to be 0.01 event per generation. These data also suggest that the infectious dose is as low as one organism, that rats that share a cage readily infect each other, and that the doubling time of P. carinii in vivo is approximately 3 days. In addition, we found that inoculation with 10(7) P. carinii organisms from a population highly heterogeneous at the UCS locus reproduced this heterogeneity. By contrast, shifts in population structure occurred in rats given 10(4) P. carinii organisms, suggesting that a small fraction of these proliferated.

Indexed as

Genetic VariationTranscription, GeneticAnimalsAntigens, FungalAntigens, SurfaceBase SequenceFungal ProteinsGene Expression Regulation, FungalMembrane GlycoproteinsMolecular Sequence DataPneumocystisPneumocystis InfectionsRatsRNA, MessengerSequence Analysis, DNAAntigens, FungalAntigens, SurfaceFungal ProteinsGPA protein, Pneumocystis carinii sp.Membrane GlycoproteinsRNA, Messenger

Identifiers

PMID12496148
PMCPMC143281
OpenAlexW2167871805

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.