ArticleNucleic acids research2002
Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis.
Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 64 papers.
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Who cites it
64 citing papers in PubMed.
- Transcriptome analysis of soybean (Glycine max) root genes differentially expressed in rhizobial, arbuscular mycorrhizal, and dual symbiosis.Journal of plant research · 2019Article
- Enhanced Secondary- and Hormone Metabolism in Leaves of Arbuscular MycorrhizalPlant physiology · 2017Article
- Jasmonate Signalling and Defence Responses in the Model Legume Medicago truncatula-A Focus on Responses to Fusarium Wilt Disease.Plants (Basel, Switzerland) · 2016Article
- Analysis of codon usage pattern in Taenia saginata based on a transcriptome dataset.Parasites & vectors · 2014Article
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- Transcriptomics of actinorhizal symbioses reveals homologs of the whole common symbiotic signaling cascade.Plant physiology · 2011Article
- Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets.BMC plant biology · 2011Article
- Arbuscular mycorrhizal symbiosis elicits shoot proteome changes that are modified during cadmium stress alleviation in Medicago truncatula.BMC plant biology · 2011Article
- Identification of genes differentially expressed in a resistant reaction to Mycosphaerella pinodes in pea using microarray technology.BMC genomics · 2011Article
- Stimulation of defense reactions in Medicago truncatula by antagonistic lipopeptides from Paenibacillus sp. strain B2.Applied and environmental microbiology · 2010Article
- MediPlEx - a tool to combine in silico & experimental gene expression profiles of the model legume Medicago truncatula.BMC research notes · 2010Article
- Symbiosis-related pea genes modulate fungal and plant gene expression during the arbuscule stage of mycorrhiza with Glomus intraradices.Mycorrhiza · 2010Article
- Comparative gene expression analysis of susceptible and resistant near-isogenic lines in common wheat infected by Puccinia triticina.DNA research : an international journal for rapid publication of reports on genes and genomes · 2010Article
- CLE peptides control Medicago truncatula nodulation locally and systemically.Plant physiology · 2010Article
- (Homo)glutathione depletion modulates host gene expression during the symbiotic interaction between Medicago truncatula and Sinorhizobium meliloti.Plant physiology · 2009Article
- Differential expression proteomics to investigate responses and resistance to Orobanche crenata in Medicago truncatula.BMC genomics · 2009Article
- FrameDP: sensitive peptide detection on noisy matured sequences.Bioinformatics (Oxford, England) · 2009Article
- Biotic and abiotic stimulation of root epidermal cells reveals common and specific responses to arbuscular mycorrhizal fungi.Plant physiology · 2009Article
- Article
4 more citing papers are in PubMed but not listed here.
Corrections and comments
- Erratum issued
Authors and funding
15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We report on a large-scale expressed sequence tag (EST) sequencing and analysis program aimed at characterizing the sets of genes expressed in roots of the model legume Medicago truncatula during interactions with either of two microsymbionts, the nitrogen-fixing bacterium Sinorhizobium meliloti or the arbuscular mycorrhizal fungus Glomus intraradices. We have designed specific tools for in silico analysis of EST data, in relation to chimeric cDNA detection, EST clustering, encoded protein prediction, and detection of differential expression. Our 21 473 5'- and 3'-ESTs could be grouped into 6359 EST clusters, corresponding to distinct virtual genes, along with 52 498 other M.truncatula ESTs available in the dbEST (NCBI) database that were recruited in the process. These clusters were manually annotated, using a specifically developed annotation interface. Analysis of EST cluster distribution in various M.truncatula cDNA libraries, supported by a refined R test to evaluate statistical significance and by 'electronic northern' representation, enabled us to identify a large number of novel genes predicted to be up- or down-regulated during either symbiotic root interaction. These in silico analyses provide a first global view of the genetic programs for root symbioses in M.truncatula. A searchable database has been built and can be accessed through a public interface.
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