Evidence map›Paper›PMID 12486008›Full record

ArticleThe EMBO journal2002

An inserted region of leucyl-tRNA synthetase plays a critical role in group I intron splicing.

Seung Bae Rho, Tommie L Lincecum, Susan A Martinis

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Emergence and evolution.Topics in current chemistry · 2014
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. CP1-dependent partitioning of pretransfer and posttransfer editing in leucyl-tRNA synthetase.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. A domain for editing by an archaebacterial tRNA synthetase.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  16. tRNA synthetase: tRNA aminoacylation and beyond.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Seung Bae RhoDepartment of Biology and Biochemistry, University of Houston, Houston, TX 77204-5001, USA.
Tommie L Lincecum
Susan A Martinis
University of Houston · US

Funding

Leucyl-tRNA Synthetase Assisted Splicing MechanismsR01GM063107 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI MARTINIS, SUSAN A · 2001 to 2005
$1.1M
NIGMS NIH HHS GM63107NIGMS NIH HHS R01 GM063107
6 · The paper itself

Abstract

Yeast mitochondrial leucyl-tRNA synthetase (LeuRS) binds to the bI4 intron and collaborates with the bI4 maturase to aid excision of the group I intron. Deletion analysis isolated the inserted LeuRS CP1 domain as a critical factor in the protein's splicing activity. Protein fragments comprised of just the LeuRS CP1 region rescued complementation of a yeast strain that expressed a splicing-defective LeuRS. Three-hybrid analysis determined that these CP1-containing LeuRS fragments, ranging from 214 to 375 amino acids, bound to the bI4 intron. In each case, interactions with only the LeuRS protein fragment specifically stimulated bI4 intron splicing activity. Substitution of a homologous CP1 domain from isoleucyl-tRNA synthetase or mutation within the LeuRS CP1 region of the smallest protein fragment abolished RNA binding and splicing activity. The CP1 domain is best known for its amino acid editing activity. However, these results suggest that elements within the LeuRS CP1 domain also play a novel role, independent of the full-length tRNA synthetase, in binding the bI4 group I intron and facilitating its self-splicing activity.

Indexed as

IntronsRNA SplicingBlotting, WesternEscherichia coliGene DeletionLeucine-tRNA LigaseMitochondriaModels, GeneticMutationPlasmidsProtein BindingProtein Structure, TertiaryReverse Transcriptase Polymerase Chain ReactionRNATwo-Hybrid System TechniquesLeucine-tRNA LigaseRNA

Identifiers

PMID12486008
PMCPMC139092
OpenAlexW2083591638

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.