Evidence map›Paper›PMID 12482986›Full record

ArticleMolecular and cellular biology2003

Activator-independent functions of the yeast mediator sin4 complex in preinitiation complex formation and transcription reinitiation.

Wendy M Reeves, Steven Hahn

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Transcriptome Analysis of FourG3 (Bethesda, Md.) · 2018
    Article
  8. Transcription regulation by the Mediator complex.Nature reviews. Molecular cell biology · 2018
    Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. The Mediator complex: a central integrator of transcription.Nature reviews. Molecular cell biology · 2015
    Review
  14. Mediator redefines itself.Cell research · 2014
    Article
  15. Suppression of Mediator is regulated by Cdk8-dependent Grr1 turnover of the Med3 coactivator.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Wendy M ReevesMolecular and Cellular Biology Program, University of Washington, Seattle 98105, USA.
Steven Hahn

Funding

MOLECULAR ANALYSIS OF RNAPIII TRANSCRIPTION INITIATIONR01GM053451 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HAHN, STEVEN M · 1995 to 2020
$11.4M
NIGMS NIH HHS GM53451NIGMS NIH HHS R01 GM053451
6 · The paper itself

Abstract

RNA polymerase II (Pol II) Mediator plays an essential role in both basal and activated transcription. Previously, subunits of the Sin4 Mediator complex (Sin4, Pgd1, Gal11, and Med2) have been implicated in both positive and negative transcriptional regulation. Furthermore, it was proposed that this subcomplex constitutes an activator-binding domain. A yeast nuclear-extract system was used to investigate the biochemical role of the Sin4 complex. In contrast to previous findings, we found at least two general activator-independent roles for the Sin4 complex. First, mutations in sin4 and pgd1 destabilized the Pol II-Med complex, leading to a reduced rate and extent of preinitiation complex (PIC) formation both in the presence and absence of activators. Although reduced in amount compared with the wild type, PICs that are formed lacking the Sin4 complex are stable and can initiate transcription normally. Second, mutation of pgd1 causes partial disruption of the Sin4 complex and leads to a defect in transcription reinitiation. This defect is caused by dissociation of mutant Mediator from promoters after initiation, leading to nonfunctional Scaffold complexes. These results show that function of the Sin4 complex is not essential for transcription activation in a crude in vitro system but that it plays key roles in the general transcription mechanism.

Indexed as

TATA-Binding Protein Associated FactorsCell ExtractsFungal ProteinsMacromolecular SubstancesMediator ComplexMutationNuclear ProteinsRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription FactorsTranscription Factors, TFIITranscription Factor TFIIDTranscription Factor TFIIHTranscription, GeneticCell ExtractsFungal ProteinsMacromolecular SubstancesMED2 protein, S cerevisiaeMediator ComplexNuclear ProteinsPGD1 protein, S cerevisiaeRNA Polymerase IISaccharomyces cerevisiae ProteinsSIN4 protein, S cerevisiaeTAF6 protein, S cerevisiaeTATA-Binding Protein Associated FactorsTrans-ActivatorsTranscription FactorsTranscription Factors, TFIITranscription Factor TFIIDtranscription factor TFIIETranscription Factor TFIIH

Identifiers

PMID12482986
PMCPMC140685

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.