Evidence map›Paper›PMID 12482963›Full record

ArticleMolecular and cellular biology2003

Yeast Isw1p forms two separable complexes in vivo.

Jay C Vary, Vamsi K Gangaraju, Jun Qin, Carolyn Church Landel, Charles Kooperberg, Blaine Bartholomew, Toshio Tsukiyama

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 140 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. The yeast genome is globally accessible in living cells.Nature structural & molecular biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Structure of the ISW1a complex bound to the dinucleosome.Nature structural & molecular biology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Structure and Function of Chromatin Remodelers.Journal of molecular biology · 2021
    Review
  16. Article
  17. Article
  18. IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Review
  20. Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Jay C VaryDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Vamsi K Gangaraju
Jun Qin
Carolyn Church Landel
Charles Kooperberg
Blaine Bartholomew
Toshio Tsukiyama
Office of Basic Energy Sciences · USSouthern Illinois University School of Medicine · USFred Hutch Cancer Center · USNational Heart Lung and Blood Institute · USUniversity of Washington · US

Funding

Molecular analysis of yeast lsw1 and lsw2 complexesR01GM058465 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TSUKIYAMA, TOSHIO · 1999 to 2019
$9.2M
INTERDISCIPLINARY TRAINING IN DEVELOPMENTAL BIOLOGYT32HD007183 · NICHD · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2015
$5.7M
TRANSCRIPTIONAL ACTIVATION BY REORGANIZING CHROMATINR01GM048413 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BARTHOLOMEW, BLAINE · 1998 to 2015
$4.7M
Adaptive Function Estimation for Genomic DataR01CA074841 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2003 to 2006
$1.1M
HAZARD REGRESSION AND OTHER POLYNOMIAL SPLINE METHODSR29CA074841 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 1998 to 2002
$351k
MECHANISM OF RNA POLYMERASE III RECOGNITIONR29GM048413 · NIGMS · SOUTHERN ILLINOIS UNIVERSITY CARBONDALE · PI BARTHOLOMEW, BLAINE · 1993 to 1997
–
NCI NIH HHS CA74841NCI NIH HHS R01 CA074841NCI NIH HHS R29 CA074841NICHD NIH HHS 5T32 HD07183NICHD NIH HHS T32 HD007183NIGMS NIH HHS GM48413NIGMS NIH HHS GM58465NIGMS NIH HHS R01 GM048413NIGMS NIH HHS R01 GM058465
6 · The paper itself

Abstract

There are several classes of ATP-dependent chromatin remodeling complexes, which modulate the structure of chromatin to regulate a variety of cellular processes. The budding yeast, Saccharomyces cerevisiae, encodes two ATPases of the ISWI class, Isw1p and Isw2p. Previously Isw1p was shown to copurify with three other proteins. Here we identify these associated proteins and show that Isw1p forms two separable complexes in vivo (designated Isw1a and Isw1b). Biochemical assays revealed that while both have equivalent nucleosome-stimulated ATPase activities, Isw1a and Isw1b differ in their abilities to bind to DNA and nucleosomal substrates, which possibly accounts for differences in specific activities in nucleosomal spacing and sliding. In vivo, the two Isw1 complexes have overlapping functions in transcriptional regulation of some genes yet distinct functions at others. In addition, these complexes show different contributions to cell growth at elevated temperatures.

Indexed as

Adenosine TriphosphatasesAmino Acid MotifsAmino Acid SequenceDNA-Binding ProteinsDNA, FungalGene Expression Regulation, FungalMacromolecular SubstancesMolecular Sequence DataMutationNucleosomesOligonucleotide Array Sequence AnalysisProtein IsoformsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Homology, Amino AcidAdenosine TriphosphatasesDNA-Binding ProteinsDNA, FungalIOC2 protein, S cerevisiaeIOC3 protein, S cerevisiaeIOC4 protein, S cerevisiaeISW1 protein, S cerevisiaeMacromolecular SubstancesNucleosomesProtein IsoformsSaccharomyces cerevisiae Proteins

Identifiers

PMID12482963
PMCPMC140669
OpenAlexW2169795463

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.