ArticlePlant physiology2002
Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization.
Article in Plant physiology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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34 citing papers in PubMed, 68 citations in OpenAlex.
- A complete telomere-to-telomere assembly of the maize genome.Nature genetics · 2023Article
- Technological advances in maize breeding: past, present and future.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Review
- Effect of Co-segregating Markers on High-Density Genetic Maps and Prediction of Map Expansion Using Machine Learning Algorithms.Frontiers in plant science · 2017Article
- Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives.Genetics · 2013Article
- Utilization of super BAC pools and Fluidigm access array platform for high-throughput BAC clone identification: proof of concept.Journal of biomedicine & biotechnology · 2012Article
- Advances in BAC-based physical mapping and map integration strategies in plants.Journal of biomedicine & biotechnology · 2012Review
- A pair of new BAC and BIBAC vectors that facilitate BAC/BIBAC library construction and intact large genomic DNA insert exchange.Plant methods · 2011Article
- B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize.Plant physiology · 2011Article
- BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.).BMC genomics · 2011Article
- Construction and characterization of a bacterial artificial chromosome library for the A-genome of cotton (G. arboreum L.).Journal of biomedicine & biotechnology · 2010Article
- A single molecule scaffold for the maize genome.PLoS genetics · 2009Article
- Change of gene structure and function by non-homologous end-joining, homologous recombination, and transposition of DNA.PLoS genetics · 2009Article
- Development of genomic resources for Citrus clementina: characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences.BMC genomics · 2008Article
- An overview of the apple genome through BAC end sequence analysis.Plant molecular biology · 2008Article
- Genetic analysis of opaque2 modifier loci in quality protein maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- A GeneTrek analysis of the maize genome.Proceedings of the National Academy of Sciences of the United States of America · 2007Article
- Physical and genetic structure of the maize genome reflects its complex evolutionary history.PLoS genetics · 2007Article
- A BAC pooling strategy combined with PCR-based screenings in a large, highly repetitive genome enables integration of the maize genetic and physical maps.BMC genomics · 2007Article
- Development of a pooled probe method for locating small gene families in a physical map of soybean using stress related paralogues and a BAC minimum tile path.Plant methods · 2006Article
- Uneven chromosome contraction and expansion in the maize genome.Genome research · 2006Article
Corrections and comments
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Authors and funding
11 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Three maize (Zea mays) bacterial artificial chromosome (BAC) libraries were constructed from inbred line B73. High-density filter sets from all three libraries, made using different restriction enzymes (HindIII, EcoRI, and MboI, respectively), were evaluated with a set of complex probes including the 185-bp knob repeat, ribosomal DNA, two telomere-associated repeat sequences, four centromere repeats, the mitochondrial genome, a multifragment chloroplast DNA probe, and bacteriophage lambda. The results indicate that the libraries are of high quality with low contamination by organellar and lambda-sequences. The use of libraries from multiple enzymes increased the chance of recovering each region of the genome. Ninety maize restriction fragment-length polymorphism core markers were hybridized to filters of the HindIII library, representing 6x coverage of the genome, to initiate development of a framework for anchoring BAC contigs to the intermated B73 x Mo17 genetic map and to mark the bin boundaries on the physical map. All of the clones used as hybridization probes detected at least three BACs. Twenty-two single-copy number core markers identified an average of 7.4 +/- 3.3 positive clones, consistent with the expectation of six clones. This information is integrated into fingerprinting data generated by the Arizona Genomics Institute to assemble the BAC contigs using fingerprint contig and contributed to the process of physical map construction.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.