Evidence map›Paper›PMID 12477847›Full record

ArticleJournal of virology2003

Marker rescue of adeno-associated virus (AAV) capsid mutants: a novel approach for chimeric AAV production.

Dawn E Bowles, Joseph E Rabinowitz, R Jude Samulski

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Best of most possible worlds: Hybrid gene therapy vectors based on parvoviruses and heterologous viruses.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Review
  5. Review
  6. Gene Therapy in Retinal Dystrophies.International journal of molecular sciences · 2019
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. E Pluribus Unum: 50 Years of Research, Millions of Viruses, and One Goal--Tailored Acceleration of AAV Evolution.Molecular therapy : the journal of the American Society of Gene Therapy · 2015
    Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Generation of novel AAV variants by directed evolution for improved CFTR delivery to human ciliated airway epithelium.Molecular therapy : the journal of the American Society of Gene Therapy · 2009
    Article
  18. Article
  19. DNA shuffling of adeno-associated virus yields functionally diverse viral progeny.Molecular therapy : the journal of the American Society of Gene Therapy · 2008
    Article
  20. Engineering and selection of shuffled AAV genomes: a new strategy for producing targeted biological nanoparticles.Molecular therapy : the journal of the American Society of Gene Therapy · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Dawn E BowlesGene Therapy Center, University of North Carolina at Chapel Hill, 27599-7352, USA.
Joseph E Rabinowitz
R Jude Samulski
University of North Carolina at Chapel Hill · US

Funding

Identification of AAV receptor-binding domainsF32GM063446 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI BOWLES, DAWN E · 2001 to 2002
$63k
NIGMS NIH HHS 1 F32 GM63446-01NIGMS NIH HHS F32 GM063446PHS HHS 5-31111PHS HHS 5-33215PHS HHS 5-33220PHS HHS 5-51686PHS HHS 5-51690
6 · The paper itself

Abstract

Marker rescue, the restoration of gene function by replacement of a defective gene with a normal one by recombination, has been utilized to produce novel adeno-associated virus (AAV) vectors. AAV serotype 2 (AAV2) clones containing wild-type terminal repeats, an intact rep gene, and a mutated cap gene, served as the template for marker rescue. When transfected alone in 293 cells, these AAV2 mutant plasmids produced noninfectious AAV virions that could not bind heparin sulfate after infection with adenovirus dl309 helper virus. However, the mutation in the cap gene was corrected after cotransfection with AAV serotype 3 (AAV3) capsid DNA fragments, resulting in the production of AAV2/AAV3 chimeric viruses. The cap genes from several independent marker rescue experiments were PCR amplified, cloned, and then sequenced. Sequencing results confirmed not only that homologous recombination occurred but, more importantly, that a mixed population of AAV chimeras carrying 16 to 2,200 bp throughout different regions of the type 3 cap gene were generated in a single marker rescue experiment. A 100% correlation was observed between infectivity and the ability of the chimeric virus to bind heparin sulfate. In addition, many of the AAV2/AAV3 chimeras examined exhibited differences at both the nucleotide and amino acid levels, suggesting that these chimeras may also exhibit unique infectious properties. Furthermore, AAV helper plasmids containing these chimeric cap genes were able to function in the triple transfection method to generate recombinant AAV. Together, the results suggest that DNA from other AAV serotypes can rescue AAV capsid mutants and that marker rescue may be a powerful, yet simple, technique to map, as well as develop, chimeric AAV capsids that display different serotype-specific properties.

Indexed as

Amino Acid SequenceBase SequenceCapsidChimeraDependovirusDNA, ViralHeLa CellsHumansMolecular Sequence DataMutationPolymerase Chain ReactionDNA, Viral

Identifiers

PMID12477847
PMCPMC140636
OpenAlexW2137130539

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.