Evidence map›Paper›PMID 12474140›Full record

ArticleAmerican journal of human genetics2003

A founding locus within the RET proto-oncogene may account for a large proportion of apparently sporadic Hirschsprung disease and a subset of cases of sporadic medullary thyroid carcinoma.

Salud Borrego, Fred A Wright, Raquel M Fernández, Nita Williams, Manuel López-Alonso, Ramana Davuluri, Guillermo Antiñolo, Charis Eng

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
15.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 102 citations in OpenAlex.

  1. ASSOCIATION OF RS2435357 AND RS1800858 POLYMORPHISMS IN RET PROTO-ONCOGENE WITH HIRSCHSPRUNG DISEASE: SYSTEMATIC REVIEW AND META-ANALYSIS.Arquivos brasileiros de cirurgia digestiva : ABCD = Brazilian archives of digestive surgery · 2019
    Pooled it
  2. Article
  3. Analysis of a pedigree of Peutz-Jeghers syndrome andTranslational cancer research · 2020
    Article
  4. Negative Association Between lncRNAPharmacogenomics and personalized medicine · 2020
    Article
  5. Two Novel SNPs inAnimals : an open access journal from MDPI · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Pathways systematically associated to Hirschsprung's disease.Orphanet journal of rare diseases · 2013
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Genetic basis of Hirschsprung's disease.Pediatric surgery international · 2009
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Salud BorregoUnidad de Genética Médica y Diagnóstico Prenatal, Hospitales Universitarios Virgen del Rocío, Sevilla, Spain. gantinolo@hvr.sas.cica.es
Fred A Wright
Raquel M Fernández
Nita Williams
Manuel López-Alonso
Ramana Davuluri
Guillermo Antiñolo
Charis Eng
Hospital Universitario Virgen del Rocío · ESThe Ohio State University · USCancer Genetics (United States) · USCancer Research UK · GB

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Jennifer A. Woyach · 1985 to 2026
$132.3M
RET RECEPTOR POLYMORPHISMS &HIRSCHSPRUNG DISEASER01HD039058 · NICHD · OHIO STATE UNIVERSITY · PI ENG, CHARIS · 2001 to 2004
$1.2M
NCI NIH HHS P30 CA016058NCI NIH HHS P30CA16058NICHD NIH HHS R01 HD039058NICHD NIH HHS R01HD39058
6 · The paper itself

Abstract

Hirschsprung disease (HSCR) is a common congenital disorder characterized by aganglionosis of the gut. The seemingly unrelated multiple endocrine neoplasia type 2 (MEN 2) is an autosomal dominant disorder characterized by medullary thyroid carcinoma (MTC), pheochromocytoma, and hyperparathyroidism. Yet, germline mutations in the RET proto-oncogene are associated with both MEN 2 and HSCR. In the former, gain-of-function mutations in a limited set of codons is found, whereas, in the latter, loss-of-function mutations are found. However, germline RET mutation is associated with only 3% of a population-based series of isolated HSCR, and little is known about susceptibility to sporadic MTC. We have found previously that specific haplotypes comprising RET coding single-nucleotide polymorphisms (SNPs) comprising exon 2 SNP A45A were strongly associated with HSCR, whereas haplotypes associated with exon 14 SNP S836S were associated with MTC. In this study, we describe three novel intron 1 SNPs, and, together with the coding SNP haplotypes, the data suggest the presence of distinct ancestral haplotypes for HSCR and sporadic MTC in linkage disequilibrium with a putative founding susceptibility locus/loci. The data are consistent with the presence of a very ancient, low-penetrance founder locus approximately 20-30 kb upstream of SNP A45A, but the failure of the SNPs to span the locus presents challenges in modeling mode of transmission or ancestry. We postulate that this founding locus is germane to both isolated HSCR and MTC but also that different mutations in this locus would predispose to one or the other.

Indexed as

Drosophila ProteinsFounder EffectAllelesBase SequenceCarcinoma, MedullaryChi-Square DistributionGene FrequencyGenetic Predisposition to DiseaseHaplotypesHirschsprung DiseaseHumansIntronsLinkage DisequilibriumMolecular Sequence DataPolymerase Chain ReactionPolymorphism, Single NucleotideDrosophila ProteinsMAS1 protein, humanProto-Oncogene MasProto-Oncogene ProteinsProto-Oncogene Proteins c-retReceptor Protein-Tyrosine KinasesRet protein, Drosophila

Identifiers

PMID12474140
PMCPMC420016
OpenAlexW1964566201

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.