Evidence map›Paper›PMID 12469324›Full record

ArticleAmerican journal of human genetics2003

A 122.5-kilobase deletion of the P gene underlies the high prevalence of oculocutaneous albinism type 2 in the Navajo population.

Zanhua Yi, Nanibaa' Garrison, Orit Cohen-Barak, Tatiana M Karafet, Richard A King, Robert P Erickson, Michael F Hammer, Murray H Brilliant

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
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  6. Review
  7. Weaving the Strands of Life (Human biology · 2020
    Review
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  13. Regressive evolution in Astyanax cavefish.Annual review of genetics · 2009
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zanhua YiDepartment of Pediatrics, College of Medicine, University of Arizona, Tucson, AZ 85724, USA.
Nanibaa' Garrison
Orit Cohen-Barak
Tatiana M Karafet
Richard A King
Robert P Erickson
Michael F Hammer
Murray H Brilliant
University of Arizona · USUniversity of Minnesota · US

Funding

MARC/Biomedical Research and Training Program at the University of ArizonaT34GM008718 · NIGMS · UNIVERSITY OF ARIZONA · PI MIRANDA, KATRINA M. · 1999 to 2021
$8.6M
NIAMS NIH HHS AR4596NIGMS NIH HHS T34 GM008718NIGMS NIH HHS T34 GM08718
6 · The paper itself

Abstract

Oculocutaneous albinism (OCA) is a genetically heterogeneous disorder. There are four known types of OCA: OCA1-OCA4. The clinical manifestations of all types of OCA include skin and hair hypopigmentation and visual impairment. Although there are a few documented observations of high frequency of albinism among Native Americans, including the Hopi, Zuni, Kuna, Jemez, Laguna, San Juan, and Navajo, no causative molecular defect has been previously reported. In the present study, we show that albinism in one Native American population, the Navajo, is caused by a LINE-mediated 122.5-kilobase deletion of the P gene, thus demonstrating that albinism in this population is OCA2. This deletion appears to be Navajo specific, because this allele was not detected in 34 other individuals with albinism who listed other Native American origins, nor has it been reported in any other ethnic group. The molecular characterization of this deletion allele allowed us to design a three-primer polymerase chain reaction system to estimate the carrier frequency in the Navajo population by screening 134 unrelated normally pigmented Navajos. The carrier frequency was found to be approximately 4.5%. The estimated prevalence of OCA2 in Navajos is between approximately 1 per 1,500 and 1 per 2,000. We further estimate that this mutation originated 400-1,000 years ago from a single founder.

Indexed as

Chromosome DeletionMembrane Transport ProteinsAlbinism, OculocutaneousAllelesBase SequenceCarrier ProteinsFounder EffectHaplotypesHeterozygoteHumansIndians, North AmericanLinkage DisequilibriumLong Interspersed Nucleotide ElementsMembrane ProteinsPrevalenceTime FactorsCarrier ProteinsMembrane ProteinsMembrane Transport ProteinsOCA2 protein, human

Identifiers

PMID12469324
PMCPMC420013
OpenAlexW2099305458

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.