Evidence map›Paper›PMID 12461083›Full record

ArticleThe Journal of experimental medicine2002

DNA-dependent protein kinase activity is not required for immunoglobulin class switching.

Gayle C Bosma, Jiyoon Kim, Teresa Urich, Donna M Fath, Maria G Cotticelli, Norman R Ruetsch, Marko Z Radic, Melvin J Bosma

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 108 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. DNA-PKcs phosphorylation at the T2609 cluster alters the repair pathway choice during immunoglobulin class switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Review
  9. Current insights into the mechanism of mammalian immunoglobulin class switch recombination.Critical reviews in biochemistry and molecular biology · 2019
    Review
  10. Article
  11. Kinase-dependent structural role of DNA-PKcs during immunoglobulin class switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. Article
  13. Review
  14. Article
  15. Functional redundancy between the XLF and DNA-PKcs DNA repair factors in V(D)J recombination and nonhomologous DNA end joining.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  16. Article
  17. Non-homologous end joining in class switch recombination: the beginning of the end.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Review
  18. Article
  19. Article
  20. Fixing DNA breaks during class switch recombination.The Journal of experimental medicine · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Gayle C BosmaInstitute for Cancer Research, Fox Chase Cancer Center, 7701 Burholme Avenue, Philadelphia, PA 19111, USA.
Jiyoon Kim
Teresa Urich
Donna M Fath
Maria G Cotticelli
Norman R Ruetsch
Marko Z Radic
Melvin J Bosma
Fox Chase Cancer Center · USUniversity of Tennessee Health Science Center · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
SEVERE COMBINED IMMUNODEFICIENCYR01CA004946 · NCI · INSTITUTE FOR CANCER RESEARCH · PI BOSMA, MELVIN J · 1985 to 2005
$2.8M
SEVERE COMBINED IMMUNODEFICIENCY IN THE MOUSER37CA004946 · NCI · INSTITUTE FOR CANCER RESEARCH · PI BOSMA, MELVIN J · 1987 to 1995
–
NCI NIH HHS CA 04946NCI NIH HHS CA 06927NCI NIH HHS P30 CA006927NCI NIH HHS R01 CA004946
6 · The paper itself

Abstract

Class switch recombination (CSR), similar to V(D)J recombination, is thought to involve DNA double strand breaks and repair by the nonhomologous end-joining pathway. A key component of this pathway is DNA-dependent protein kinase (DNA-PK), consisting of a catalytic subunit (DNA-PKcs) and a DNA-binding heterodimer (Ku70/80). To test whether DNA-PKcs activity is essential for CSR, we examined whether IgM(+) B cells from scid mice with site-directed H and L chain transgenes were able to undergo CSR. Although B cells from these mice were shown to lack DNA-PKcs activity, they were able to switch from IgM to IgG or IgA with close to the same efficiency as B cells from control transgenic and nontransgenic scid/+ mice, heterozygous for the scid mutation. We conclude that CSR, unlike V(D)J recombination, can readily occur in the absence of DNA-PKcs activity. We suggest nonhomologous end joining may not be the (primary or only) mechanism used to repair DNA breaks during CSR.

Indexed as

DNA-Binding ProteinsImmunoglobulin Class SwitchingAnimalsB-LymphocytesDNA-Activated Protein KinaseDNA RepairGenes, ImmunoglobulinImmune ToleranceImmunoglobulin AImmunoglobulin GInterleukin-4LipopolysaccharidesMiceMice, Inbred BALB CMice, SCIDProtein Serine-Threonine KinasesDNA-Activated Protein KinaseDNA-Binding ProteinsImmunoglobulin AImmunoglobulin GInterleukin-4LipopolysaccharidesProtein Serine-Threonine KinasesTransforming Growth Factor beta

Identifiers

PMID12461083
PMCPMC2194268
OpenAlexW2146532448

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.