Evidence map›Paper›PMID 12454167›Full record

ArticleJournal of clinical microbiology2002

Calibrated real-time PCR assay for quantitation of human herpesvirus 8 DNA in biological fluids.

Francesco Broccolo, Giuseppe Locatelli, Loredana Sarmati, Sara Piergiovanni, Fabrizio Veglia, Massimo Andreoni, Stefano Buttò, Barbara Ensoli, Paolo Lusso, Mauro S Malnati

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
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  7. Human herpesvirus 6A accelerates AIDS progression in macaques.Proceedings of the National Academy of Sciences of the United States of America · 2007
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Francesco BroccoloUnit of Human Virology, DIBIT, San Raffele Scientific Institute, 20132 Milan, Italy.
Giuseppe Locatelli
Loredana Sarmati
Sara Piergiovanni
Fabrizio Veglia
Massimo Andreoni
Stefano Buttò
Barbara Ensoli
Paolo Lusso
Mauro S Malnati

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accurate laboratory tests for the diagnosis of active human herpesvirus 8 (HHV-8) infection are becoming essential to study the pathogenesis of HHV-8-associated tumors and for the clinical management of HHV-8-infected individuals. We have developed a highly sensitive, calibrated quantitative real-time PCR assay for the measurement of cell-free HHV-8 DNA in body fluids, based on the addition of a synthetic DNA calibrator prior to DNA extraction. The calibrator controls each sample for the presence of PCR inhibitors, determines a cutoff value of sensitivity for negative samples, and normalizes positive samples for the efficiency of DNA recovery. The assay shows a wide dynamic range of detection (between 1 and 10(6) viral genome equivalents/reaction) and a high degree of accuracy even in the presence of high amounts (up to 1 micro g) of human genomic DNA. Moreover, the assay has a very high sensitivity (lower detection limit, 10 genome equivalents/ml) and a high degree of reproducibility and repeatability with a coefficient of variation (CV) of <15 and 23%, respectively. Furthermore, the use of the calibrator improves the accuracy of quantitation and decreases the intersample variability (CV, 9 and 6%, respectively). The sensitivity and specificity of the assay were tested with a series of clinical specimens obtained from patients affected by various HHV-8-related diseases, as well as from a wide number of controls. In conclusion, our calibrated real-time PCR assay provides a reliable high-throughput method for quantitation of HHV-8 DNA in clinical and laboratory specimens.

Indexed as

Polymerase Chain ReactionAIDS-Related Opportunistic InfectionsBody FluidsDNA PrimersDNA, ViralHerpesviridae InfectionsHerpesvirus 8, HumanHumansReproducibility of ResultsSarcoma, KaposiSensitivity and SpecificityTaq PolymeraseViral LoadDNA PrimersDNA, ViralTaq Polymerase

Identifiers

PMID12454167
PMCPMC154587

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.