Evidence map›Paper›PMID 12448880›Full record

ArticleMolecular biotechnology2002

Validation of single nucleotide polymorphism quantification in pooled DNA samples with SNaPIT. A glycosylase-mediated methods for polymorphism detection method.

Sarah Curran, Linzy Hill, Geraldine O'Grady, Dragana Turic, Philip Asherson, Eric Taylor, Pak Sham, Ian Craig, Pat Vaughan

Abstract readComparative StudyEvaluation StudyValidation Study
PubMed Publisher
In one paragraph

Article in Molecular biotechnology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sarah CurranS.G.D.P. Research Centre, Institute of Psychiatry, Box Pobo, De Crespigny Park, Denmark Hill, London SE5 8AF, UK. s-curran@iop.kcl.ac.uk
Linzy Hill
Geraldine O'Grady
Dragana Turic
Philip Asherson
Eric Taylor
Pak Sham
Ian Craig
Pat Vaughan

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Association studies using genome scans to identify quantitative trait loci for multifactorial disorders, with anything approaching reasonable power, have been compromised by the need for a very dense array of genetic markers and large numbers of affected individuals. These requirements impose enormous burdens on the genotyping capacity for most laboratories. DNA pooling has been proposed as a possible approach to reduce genotyping costs and effort. We report on the application of the SNaPIT technology to evaluate allele frequencies in pooled DNA samples and conclude that it offers a cost effective, efficient and accurate estimator and provides several advantages over competing technologies in this regard.

Indexed as

Chromosome MappingDNADNA GlycosylasesDNA Mutational AnalysisGene FrequencyGenetic TestingGenetic VariationGenotypeHumansN-Glycosyl HydrolasesPolymorphism, Single NucleotideReproducibility of ResultsSensitivity and SpecificitySequence AlignmentDNADNA GlycosylasesN-Glycosyl Hydrolases

Identifiers

PMID12448880

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.