Evidence map›Paper›PMID 12438415›Full record

ArticleThe Journal of cell biology2002

REF1/Aly and the additional exon junction complex proteins are dispensable for nuclear mRNA export.

David Gatfield, Elisa Izaurralde

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 192 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Evolution and diversification of the nuclear pore complex.Biochemical Society transactions · 2021
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. The exon junction complex as a node of post-transcriptional networks.Nature reviews. Molecular cell biology · 2016
    Review
  20. Article

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

David GatfieldEuropean Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Elisa Izaurralde
European Molecular Biology Laboratory · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The metazoan proteins UAP56, REF1, and NXF1 are thought to bind sequentially to mRNA to promote its export to the cytoplasm: UAP56 is thought to recruit REF1 to nascent mRNA; REF1 acts as an adaptor protein mediating the association of NXF1 with mRNA, whereas NXF1 translocates the mRNA across the nuclear pore complex. REF1 is a component of the exon-exon junction complex (EJC); thus, the EJC is thought to play a role in the export of spliced mRNA. NXF1 and UAP56 are essential for mRNA export. An essential role for metazoan REF1 or the additional EJC proteins in this process has not been established. Contrary to expectation, we show that REF1 and the additional components of the EJC are dispensable for export of bulk mRNA in Drosophila cells. Only when REF1 and RNPS1 are codepleted, or when all EJC proteins are simultaneously depleted is a partial nuclear accumulation of polyadenylated RNAs observed. Because a significant fraction of bulk mRNA is detected in the cytoplasm of cells depleted of all EJC proteins, we conclude that additional adaptor protein(s) mediate the interaction between NXF1 and cellular mRNAs in metazoa. Our results imply that the essential role of UAP56 in mRNA export is not restricted to the recruitment of REF1.

Indexed as

Active Transport, Cell NucleusAdenosine TriphosphatasesAnimalsAntigens, NuclearCell LineDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsExonsHumansMethionineNuclear Matrix-Associated ProteinsNuclear ProteinsNucleocytoplasmic Transport ProteinsReceptors, Eph FamilyRecombinant ProteinsAdenosine TriphosphatasesALYREF protein, humanAntigens, NuclearDek protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsMethionineNuclear Matrix-Associated ProteinsNuclear ProteinsNucleocytoplasmic Transport ProteinsNXF1 protein, humanRBM8A protein, humanReceptors, Eph FamilyRecombinant ProteinsRibonucleoproteinsRNA-Binding ProteinsRNA-dependent ATPaseRNA, MessengerRNPS1 protein, humanSRRM1 protein, humanTranscription Factors

Identifiers

PMID12438415
PMCPMC2173090
OpenAlexW2085192863

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.