Evidence map›Paper›PMID 12438362›Full record

ArticleInfection and immunity2002

Molecular characterization of a serotype O121:H19 clone, a distinct Shiga toxin-producing clone of pathogenic Escherichia coli.

Cheryl L Tarr, Teresa M Large, Chris L Moeller, David W Lacher, Phillip I Tarr, David W Acheson, Thomas S Whittam

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 92 citations in OpenAlex.

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  18. Cryptic lineages of the genus Escherichia.Applied and environmental microbiology · 2009
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Cheryl L TarrMicrobial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, East Lansing 48824, USA.
Teresa M Large
Chris L Moeller
David W Lacher
Phillip I Tarr
David W Acheson
Thomas S Whittam
Michigan State University · USSeattle Children's Hospital · USUniversity of Maryland, Baltimore · US

Funding

EVOLUTION OF VIRULENCE BY GENE ACQUISITIONR01AI047499 · NIAID · WASHINGTON UNIVERSITY · PI TARR, PHILLIP I · 1999 to 2002
$1.1M
ENTERIC PATHOGENS - MUCOSAL RESEARCH UNIT-266965299N01AI065299 · NIAID · UNIVERSITY OF MARYLAND BALT PR · 1996 to 2003
$1.0M
NIAID NIH HHS AI-47499NIAID NIH HHS N01 AI065299NIAID NIH HHS N01-AI-65299NIAID NIH HHS R01 AI047499
6 · The paper itself

Abstract

Most illnesses caused by Shiga toxin-producing Escherichia coli (STEC) have been attributed to E. coli serotype O157:H7, but non-O157 STEC infections are now increasingly recognized as public health problems worldwide. The O121:H19 serotype is being isolated more frequently from clinical specimens and has been implicated in one waterborne outbreak. We used multilocus virulence gene profiling, a PCR-based assay, to characterize the virulence gene content of 24 isolates of serotype O121:H19 and nonmotile variants. We also performed multilocus enzyme electrophoresis and multilocus sequencing to establish the clonal relatedness of O121 isolates and to elucidate the relationship of O121 to common STEC clones. The 24 isolates were found to represent a single bacterial clone, as there was no allelic variation across 18 enzyme loci among the isolates. The complete nucleotide sequence of the intimin gene differed by four substitutions from that of the epsilon (Int- epsilon ) allele of O103:H2 strain PMK5. The typical O121 virulence gene profile was similar to the profiles of enterohemorrhagic E. coli (EHEC) clones of E. coli: it included a Shiga toxin 2 gene (stx(2)), two genes on the EHEC plasmid (toxB and ehxA), and the gene encoding intimin (eae). Despite the similarities, putative virulence genes distributed on O islands-large chromosomal DNA segments present in the O157:H7 genome-were useful for discriminating among STEC serotypes and the O121:H19 clone had a composite profile that was distinct from the profiles of the other major EHEC clones of pathogenic E. coli. On the basis of sequencing analysis with 13 housekeeping genes, the O121:H19 clone did not fall into any of the four classical EHEC and enteropathogenic E. coli groups but instead was closely related to two eae-negative STEC strains.

Indexed as

Escherichia coli ProteinsEvolution, MolecularAdhesins, BacterialAllelesBacterial ProteinsCarrier ProteinsDiarrheaDNA, BacterialElectrophoresis, Gel, Pulsed-FieldEnzymesEscherichia coliEscherichia coli InfectionsHumansPhylogenyPolymerase Chain ReactionSequence Analysis, DNAAdhesins, BacterialBacterial ProteinsCarrier ProteinsDNA, BacterialeaeA protein, E coliEnzymesEscherichia coli ProteinsShiga Toxins

Identifiers

PMID12438362
PMCPMC133070
OpenAlexW2170555862

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.