Evidence map›Paper›PMID 12438352›Full record

ArticleInfection and immunity2002

Identification and genetic characterization of PmrA-regulated genes and genes involved in polymyxin B resistance in Salmonella enterica serovar typhimurium.

Rita Tamayo, Sara S Ryan, Andrea J McCoy, John S Gunn

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 92 citations in OpenAlex.

  1. Review
  2. Article
  3. Antibiotic Resistance inAntibiotics (Basel, Switzerland) · 2026
    Review
  4. PmrA Mutations in Drug-ResistantMicroorganisms · 2025
    Article
  5. How Bacterial Pathogens Coordinate Appetite with Virulence.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  6. Article
  7. Review
  8. Variability in Adaptive Resistance ofAntibiotics (Basel, Switzerland) · 2022
    Article
  9. Article
  10. Molecular Characterization ofMicroorganisms · 2022
    Article
  11. Article
  12. RpoS-regulatedVirulence · 2020
    Article
  13. Article
  14. Comparison of Gene Expression Profiles of UropathogenicAntibiotics (Basel, Switzerland) · 2019
    Article
  15. Transcriptomic Analysis ofMolecules (Basel, Switzerland) · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Rita TamayoUniversity of Texas Health Science Center at San Antonio, 78229-7758, USA.
Sara S Ryan
Andrea J McCoy
John S Gunn
The University of Texas Health Science Center at San Antonio · US

Funding

Salmonella Antimicrobial Peptide ResistanceR01AI043521 · NIAID · OHIO STATE UNIVERSITY · PI GUNN, JOHN S · 2004 to 2013
$3.1M
SALMONELLA ANTIMICROBIAL PEPTIDE RESISTANCER29AI043521 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI GUNN, JOHN S · 1998 to 2002
$409k
NIAID NIH HHS AI43521NIAID NIH HHS R01 AI043521NIAID NIH HHS R29 AI043521
6 · The paper itself

Abstract

Salmonella enterica serovar Typhimurium encounters antimicrobial peptides (AP) within the phagosomes of professional phagocytes and at intestinal mucosal surfaces. Salmonella serovar Typhimurium utilizes the two-component regulatory system PmrA-PmrB, which is activated in response to the environmental conditions encountered in vivo, to regulate resistance to several AP, including polymyxin B (PM). Random MudJ transposon mutagenesis was used to identify PmrA-PmrB-regulated genes, as well as genetic loci necessary for PM resistance. Three different phenotypic classes of genes were identified: those necessary for PM resistance and regulated by PmrA, those necessary for PM resistance and not regulated by PmrA, and PmrA-regulated genes not required for PM resistance. Loci identified as necessary for PM resistance showed between 6- and 192-fold increased sensitivities to PM, and transposon insertion sites include surA, tolB, and gnd. PmrA-regulated loci identified included dgoA and yibD and demonstrated 500- and 2,500-fold activation by PmrA, respectively. The role of the identified loci in aminoarabinose modification of lipid A was determined by paper chromatography. The gnd mutant demonstrated a loss of aminoarabinose from lipid A, which was suggested to be due to a polar effect on the downstream gene pmrE. The remaining PM(s) mutants (surA and tolB), as well as the two PmrA-regulated gene (yibD and dgoA) mutants, retained aminoarabinose on lipid A. yibD, dgoA, and gnd (likely affecting pmrE) played no role in PmrA-regulated resistance to high iron concentrations, while surA and tolB mutations grew poorly on high iron media. All PM(s) mutants identified in this study demonstrated a defect in virulence compared to wild-type Salmonella serovar Typhimurium when administered orally to mice, while the PmrA-regulated gene (yibD and dgoA) mutants showed normal virulence in mice. These data broaden our understanding of in vivo gene regulation, lipopolysaccharide modification, and mechanisms of resistance to AP in enteric bacteria.

Indexed as

Drug Resistance, BacterialGene Expression Regulation, BacterialAnimalsAnti-Bacterial AgentsBacterial ProteinsBase SequenceDNA Transposable ElementsFemaleLipid AMiceMice, Inbred BALB CMicrobial Sensitivity TestsMolecular Sequence DataMutagenesis, InsertionalMutationPolymyxin BAnti-Bacterial AgentsBacterial ProteinsDNA Transposable ElementsLipid ApmrA protein, BacteriaPolymyxin B

Identifiers

PMID12438352
PMCPMC133008
OpenAlexW2151637219

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.