Evidence map›Paper›PMID 12433988›Full record

ArticleNucleic acids research2002

Assembly, purification and crystallization of an active HIV-1 reverse transcriptase initiation complex.

Janice D Pata, Bradford R King, Thomas A Steitz

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. General Strategies for RNA X-ray Crystallography.Molecules (Basel, Switzerland) · 2023
    Review
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  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Janice D PataDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520-8114, USA.
Bradford R King
Thomas A Steitz
Yale University · US

Funding

REVERSE TRANSCRIPTASE AND OTHER HIV MOLECULAR STRUCTURESR01AI043896 · NIAID · YALE UNIVERSITY · PI STEITZ, THOMAS ARTHUR · 1998 to 2002
$696k
STRUCTURE/FUNCTION STUDIES OF HIV-1 RTF32AI009693 · NIAID · YALE UNIVERSITY · PI PATA, JANICE D · 1996 to 1999
–
NIAID NIH HHS AI09693NIAID NIH HHS AI43896NIAID NIH HHS F32 AI009693
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) initiates DNA synthesis from the 3' end of human tRNA(Lys3). We have used cis-acting hammerhead ribozymes to produce homogeneous-length transcribed tRNA(Lys3) and have developed conditions for purifying highly structured RNAs on a modified tube-gel apparatus. Titration experiments show that this RNA can assemble into an initiation complex that contains equimolar amounts of HIV-1 RT, transcribed tRNA(Lys3), and chemically synthesized template RNA. We have purified this complex using gel-filtration chromatography and have found that it is homogeneous with respect to molecular weight, demonstrating that the initiation complex forms a single discrete species at micromolar concentrations. When this initiation complex is supplied with deoxynucleotides, essentially all of the tRNA is used as a primer by HIV-1 RT and is fully extended to the 5' end of the template. Thus, in vitro transcribed tRNA can be used efficiently as a primer by HIV-1 RT. We have also obtained crystals of the HIV-1 initiation complex that require the precisely defined ends of this in vitro transcribed tRNA(Lys3) to grow.

Indexed as

HIV Reverse TranscriptaseRNA, Transfer, LysBase SequenceChromatography, GelCrystallizationDNAHumansMacromolecular SubstancesMolecular Sequence DataRNARNA, CatalyticTemplates, GeneticTranscription, GeneticDNAhammerhead ribozymeHIV Reverse TranscriptaseMacromolecular SubstancesRNARNA, CatalyticRNA, Transfer, Lys

Identifiers

PMID12433988
PMCPMC137168
OpenAlexW2083737560

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.