Evidence map›Paper›PMID 12428212›Full record

ArticleAmerican journal of human genetics2002

Transcription factor SOX3 is involved in X-linked mental retardation with growth hormone deficiency.

Frédéric Laumonnier, Nathalie Ronce, Ben C J Hamel, Paul Thomas, James Lespinasse, Martine Raynaud, Christine Paringaux, Hans Van Bokhoven, Vera Kalscheuer, Jean-Pierre Fryns and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed, 1 pooled it
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 1 synthesis or guideline pooled it, 295 citations in OpenAlex.

  1. Pooled it
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  17. Transcriptional control of human gametogenesis.Human reproduction update · 2022
    Article
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  19. Review
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 5 countries.

Frédéric LaumonnierService de GénétiquehyphenINSERM U316, CHU Bretonneau, Tours, France.
Nathalie Ronce
Ben C J Hamel
Paul Thomas
James Lespinasse
Martine Raynaud
Christine Paringaux
Hans Van Bokhoven
Vera Kalscheuer
Jean-Pierre Fryns
Jamel Chelly
Claude Moraine
Sylvain Briault
Centre Hospitalier Universitaire de Tours · FRInserm · FRRadboud University Nijmegen · NLCentre Hospitalier Métropole Savoie · FRHôpital Cochin · FRKU Leuven · BEMax Planck Institute for Molecular Genetics · DERoyal Children's Hospital · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Physical mapping of the breakpoints of a pericentric inversion of the X chromosome (46,X,inv[X][p21q27]) in a female patient with mild mental retardation revealed localization of the Xp breakpoint in the IL1RAPL gene at Xp21.3 and the Xq breakpoint near the SOX3 gene (SRY [sex determining region Y]-box 3) (GenBank accession number NM_005634) at Xq26.3. Because carrier females with microdeletion in the IL1RAPL gene do not present any abnormal phenotype, we focused on the Xq breakpoint. However, we were unable to confirm the involvement of SOX3 in the mental retardation in this female patient. To validate SOX3 as an X-linked mental retardation (XLMR) gene, we performed mutation analyses in families with XLMR whose causative gene mapped to Xq26-q27. We show here that the SOX3 gene is involved in a large family in which affected individuals have mental retardation and growth hormone deficiency. The mutation results in an in-frame duplication of 33 bp encoding for 11 alanines in a polyalanine tract of the SOX3 gene. The expression pattern during neural and pituitary development suggests that dysfunction of the SOX3 protein caused by the polyalanine expansion might disturb transcription pathways and the regulation of genes involved in cellular processes and functions required for cognitive and pituitary development.

Indexed as

Chromosome BreakageChromosome InversionChromosomes, Human, XDNA-Binding ProteinsFemaleGene Expression Regulation, DevelopmentalGenetic LinkageHigh Mobility Group ProteinsHuman Growth HormoneHumansMaleMolecular Sequence DataMutationPedigreePeptidesPolymorphism, GeneticDNA-Binding ProteinsHigh Mobility Group ProteinsHuman Growth HormonePeptidespolyalanineSOX3 protein, humanSOXB1 Transcription FactorsTranscription Factors

Identifiers

PMID12428212
PMCPMC420004
OpenAlexW1969776185

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.