Evidence map›Paper›PMID 12427865›Full record

ArticleThe Journal of cell biology2002

Signal recognition particle RNA localization within the nucleolus differs from the classical sites of ribosome synthesis.

Joan C Politz, Laura B Lewandowski, Thoru Pederson

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Fanconi anemia protein FANCI functions in ribosome biogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Review
  7. Exportin-5 mediates nuclear export of SRP RNA in vertebrates.Genes to cells : devoted to molecular & cellular mechanisms · 2015
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. The nucleus introduced.Cold Spring Harbor perspectives in biology · 2011
    Review
  14. The nucleolus.Cold Spring Harbor perspectives in biology · 2011
    Review
  15. MicroRNAs with a nucleolar location.RNA (New York, N.Y.) · 2009
    Article
  16. Nucleolus: the fascinating nuclear body.Histochemistry and cell biology · 2008
    Review
  17. Article
  18. MicroRNA-206 colocalizes with ribosome-rich regions in both the nucleolus and cytoplasm of rat myogenic cells.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Joan C PolitzDepartment of Biochemistry and Molecular Pharmacology, Program in Cell Dynamics, University of Massachusetts Medical School, 377 Plantation Street, Worcester, MA 01605, USA.
Laura B Lewandowski
Thoru Pederson
University of Massachusetts Chan Medical School · US

Funding

RNA PROCESSING AND RIBONUCLEOPROTEINR01GM021595 · NIGMS · WORCESTER FOUNDATION FOR BIOMEDICAL RES · PI PEDERSON, THORU · 1985 to 2001
$886k
NIGMS NIH HHS GM 21595
6 · The paper itself

Abstract

The nucleolus is the site of ribosome biosynthesis, but is now known to have other functions as well. In the present study we have investigated how the distribution of signal recognition particle (SRP) RNA within the nucleolus relates to the known sites of ribosomal RNA synthesis, processing, and nascent ribosome assembly (i.e., the fibrillar centers, the dense fibrillar component (DFC), and the granular component). Very little SRP RNA was detected in fibrillar centers or the DFC of the nucleolus, as defined by the RNA polymerase I-specific upstream binding factor and the protein fibrillarin, respectively. Some SRP RNA was present in the granular component, as marked by the protein B23, indicating a possible interaction with ribosomal subunits at a later stage of maturation. However, a substantial portion of SRP RNA was also detected in regions of the nucleolus where neither B23, UBF, or fibrillarin were concentrated. Dual probe in situ hybridization experiments confirmed that a significant fraction of nucleolar SRP RNA was not spatially coincident with 28S ribosomal RNA. These results demonstrate that SRP RNA concentrates in an intranucleolar location other than the classical stations of ribosome biosynthesis, suggesting that there may be nucleolar regions that are specialized for other functions.

Indexed as

AnimalsCell NucleolusCells, CulturedChromosomal Proteins, Non-HistoneFibroblastsHumansIn Situ HybridizationNucleolus Organizer RegionOligonucleotide ProbesPol1 Transcription Initiation Complex ProteinsRatsRecombinant Fusion ProteinsRibonucleoproteinsRibosomesRNASignal Recognition ParticleChromosomal Proteins, Non-HistonefibrillarinOligonucleotide ProbesPol1 Transcription Initiation Complex ProteinsRecombinant Fusion ProteinsRibonucleoproteinsRNASignal Recognition Particletranscription factor UBF

Identifiers

PMID12427865
PMCPMC2173079
OpenAlexW2035584094

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.