Evidence map›Paper›PMID 12419235›Full record

ArticleMolecular cell2002

Transcriptional inhibition of genes with severe histone h3 hypoacetylation in the coding region.

Arnold Kristjuhan, Jane Walker, Noriyuki Suka, Michael Grunstein, Douglas Roberts, Bradley R Cairns, Jesper Q Svejstrup

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 119 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Arnold KristjuhanMechanisms of Transcription Laboratory, Cancer Research UK London Research Institute, Clare Hall Laboratories, South Mimms, EN6 3LD, Hertfordshire, United Kingdom.
Jane Walker
Noriyuki Suka
Michael Grunstein
Douglas Roberts
Bradley R Cairns
Jesper Q Svejstrup
Cancer Research UK · GBHoward Hughes Medical Institute · USUniversity of California, Los Angeles · US

Funding

CONTROL OF HISTONE FUNCTION IN YEASTR37GM023674 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GRUNSTEIN, MICHAEL · 1998 to 2007
$4.7M
ANALYSIS OF THE CHROMATIN-REMODELING COMPLEX RSCR01GM060415 · NIGMS · UNIVERSITY OF UTAH · PI CAIRNS, BRADLEY R. · 1999 to 2011
$3.1M
GENETIC AND BIOCHEMICAL APPROACH TO HISTONE FUNCTIONR01GM023674 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GRUNSTEIN, MICHAEL · 1985 to 2011
$2.6M
Howard Hughes Medical InstituteNIGMS NIH HHS GM23674NIGMS NIH HHS GM60415NIGMS NIH HHS R01 GM023674NIGMS NIH HHS R01 GM060415NIGMS NIH HHS R37 GM023674
6 · The paper itself

Abstract

Changes in histone acetylation at promoters correlate with transcriptional activation and repression, but whether acetylation of histones in the coding region of genes is important for transcription is less clear. Here, we show that cells lacking the histone acetyltransferases Gcn5 and Elp3 have widespread and severe histone H3 hypoacetylation in chromatin. Surprisingly, severe hypoacetylation in the promoter does not invariably affect the ability of TBP to bind the TATA element, or transcription of the gene. By contrast, similar hypoacetylation of the coding region correlates with inhibition of transcription, and inhibition correlates better with the overall charge of the histone H3 tail than with hypoacetylation of specific lysine residues. These data provide insights into the effects of histone H3 hypoacetylation in vivo and underscore the importance of the overall charge of the histone tail for transcription.

Indexed as

AcetylationDNA-Binding ProteinsGene Expression Regulation, FungalTranscription, GeneticAcetyltransferasesGenes, FungalGene SilencingHistone AcetyltransferasesHistonesMutationOpen Reading Framesp300-CBP-Associated FactorPromoter Regions, GeneticProtein KinasesRNA Polymerase IISaccharomyces cerevisiaeAcetyltransferasesDNA-Binding ProteinsGCN5 protein, S cerevisiaeHistone AcetyltransferasesHistonesp300-CBP-Associated FactorProtein KinasesRNA Polymerase IISaccharomyces cerevisiae ProteinsTATA-Box Binding Protein

Identifiers

PMID12419235
PMCPMC9035295
OpenAlexW2165924334

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.