Evidence map›Paper›PMID 12417713›Full record

ArticleThe Plant cell2002

Proteomic characterization of the small subunit of Chlamydomonas reinhardtii chloroplast ribosome: identification of a novel S1 domain-containing protein and unusually large orthologs of bacterial S2, S3, and S5.

Kenichi Yamaguchi, Susana Prieto, María Verónica Beligni, Paul A Haynes, W Hayes McDonald, John R Yates, Stephen P Mayfield

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 80 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kenichi YamaguchiDepartment of Cell Biology and the Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
Susana Prieto
María Verónica Beligni
Paul A Haynes
W Hayes McDonald
John R Yates
Stephen P Mayfield
Scripps Research Institute · USTorrey Pines Institute For Molecular Studies · US

Funding

PROTEIN/RNA INTERACTIONS IN TRANSLATIONAL REGULATIONR01GM054659 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI MAYFIELD, STEPHEN P · 1997 to 2005
$1.7M
NIGMS NIH HHS GM54659NIGMS NIH HHS R01 GM054659
6 · The paper itself

Abstract

To understand how chloroplast mRNAs are translated into functional proteins, a detailed understanding of all of the components of chloroplast translation is needed. To this end, we performed a proteomic analysis of the plastid ribosomal proteins in the small subunit of the chloroplast ribosome from the green alga Chlamydomonas reinhardtii. Twenty proteins were identified, including orthologs of Escherichia coli S1, S2, S3, S4, S5, S6, S7, S9, S10, S12, S13, S14, S15, S16, S17, S18, S19, S20, and S21 and a homolog of spinach plastid-specific ribosomal protein-3 (PSRP-3). In addition, a novel S1 domain-containing protein, PSRP-7, was identified. Among the identified proteins, S2 (57 kD), S3 (76 kD), and S5 (84 kD) are prominently larger than their E. coli or spinach counterparts, containing N-terminal extensions (S2 and S5) or insertion sequence (S3). Structural predictions based on the crystal structure of the bacterial 30S subunit suggest that the additional domains of S2, S3, and S5 are located adjacent to each other on the solvent side near the binding site of the S1 protein. These additional domains may interact with the S1 protein and PSRP-7 to function in aspects of mRNA recognition and translation initiation that are unique to the Chlamydomonas chloroplast.

Indexed as

Algal ProteinsAmino Acid SequenceAnimalsChlamydomonas reinhardtiiChromatography, LiquidElectrophoresis, Polyacrylamide GelMass SpectrometryMolecular Sequence DataPhylogenyProtein ConformationProteomeRibosomal ProteinsRibosomesSequence Homology, Amino AcidAlgal ProteinsProteomeRibosomal Proteins

Identifiers

PMID12417713
PMCPMC152739
OpenAlexW2105905235

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.