Evidence map›Paper›PMID 12417656›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2002

Genome-wide expression analysis in Drosophila reveals genes controlling circadian behavior.

M Fernanda Ceriani, John B Hogenesch, Marcelo Yanovsky, Satchidananda Panda, Martin Straume, Steve A Kay

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 194 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
194citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

194 citing papers in PubMed, 1 synthesis or guideline pooled it, 357 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Uncovering the circadian transcriptome ofProceedings. Biological sciences · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Life science alliance · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Review
  19. The E3 ubiquitin ligase adaptorProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Article

134 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

M Fernanda CerianiInstitute of Childhood and Neglected Diseases, Department of Cell Biology-ICND216, The Scripps Research Institute, La Jolla, California 92037, USA.
John B Hogenesch
Marcelo Yanovsky
Satchidananda Panda
Martin Straume
Steve A Kay
Scripps Research Institute · USGenomics Institute of the Novartis Research Foundation · USUniversity of Virginia · US

Funding

MOLECULAR ANALYSIS OF CIRCADIAN RHYTHMS IN SINGLE CELLSR01MH051573 · NIMH · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI KAY, STEVE A · 1994 to 2013
$4.9M
NIMH NIH HHS MH51573NIMH NIH HHS R01 MH051573
6 · The paper itself

Abstract

In Drosophila, a number of key processes such as emergence from the pupal case, locomotor activity, feeding, olfaction, and aspects of mating behavior are under circadian regulation. Although we have a basic understanding of how the molecular oscillations take place, a clear link between gene regulation and downstream biological processes is still missing. To identify clock-controlled output genes, we have used an oligonucleotide-based high-density array that interrogates gene expression changes on a whole genome level. We found genes regulating various physiological processes to be under circadian transcriptional regulation, ranging from protein stability and degradation, signal transduction, heme metabolism, detoxification, and immunity. By comparing rhythmically expressed genes in the fly head and body, we found that the clock has adapted its output functions to the needs of each particular tissue, implying that tissue-specific regulation is superimposed on clock control of gene expression. Finally, taking full advantage of the fly as a model system, we have identified and characterized a cycling potassium channel protein as a key step in linking the transcriptional feedback loop to rhythmic locomotor behavior.

Indexed as

Drosophila ProteinsGene Expression ProfilingGenomeAnimalsBehavior, AnimalBiological ClocksBlotting, NorthernCircadian RhythmDrosophilaGene Expression RegulationHemeLarge-Conductance Calcium-Activated Potassium ChannelsMotor ActivityMutationOligonucleotide Array Sequence AnalysisPhotoperiodDrosophila ProteinsHemeLarge-Conductance Calcium-Activated Potassium ChannelsPotassium ChannelsPotassium Channels, Calcium-ActivatedRNA, MessengerSlob protein, Drosophilaslo protein, Drosophila

Identifiers

PMID12417656
PMCPMC6758054
OpenAlexW1982442428

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.