Evidence map›Paper›PMID 12414941›Full record

ArticleJournal of virology2002

Cell proteins TIA-1 and TIAR interact with the 3' stem-loop of the West Nile virus complementary minus-strand RNA and facilitate virus replication.

W Li, Y Li, N Kedersha, P Anderson, M Emara, K M Swiderek, G T Moreno, M A Brinton

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 201 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. T-Cell Intracellular Antigen 1-Like Protein in Physiology and Pathology.International journal of molecular sciences · 2022
    Review
  8. Review
  9. Review
  10. Review
  11. The Integral Role of RNA in Stress Granule Formation and Function.Frontiers in cell and developmental biology · 2021
    Review
  12. Review
  13. Universal RNAFrontiers in microbiology · 2020
    Review
  14. Review
  15. Article
  16. Stress Granules and Processing Bodies in Translational Control.Cold Spring Harbor perspectives in biology · 2019
    Review
  17. Review
  18. Article
  19. Strategies for Success. Viral Infections and Membraneless Organelles.Frontiers in cellular and infection microbiology · 2019
    Review
  20. The Pathophysiology of Tau and Stress Granules in Disease.Advances in experimental medicine and biology · 2019
    Review

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

W LiDepartment of Biology, Georgia State University, Atlanta, Georgia 30303, USA.
Y Li
N Kedersha
P Anderson
M Emara
K M Swiderek
G T Moreno
M A Brinton
Georgia State University · USBrigham and Women's Hospital · USBeckman Research InstituteCity of Hope · US

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI XIWEI WU · 1985 to 2026
$86.3M
CELLULAR GENE PRODUCT MODULATES FLAVIVIRUS RNA SYNTHESISR01AI018382 · NIAID · WISTAR INSTITUTE · PI BRINTON, MARGO A · 1987 to 1996
–
RNA TERTIARY STRUCTURE AND PROTEIN INTERACTIONSR01GM054896 · NIGMS · GEORGIA STATE UNIVERSITY · PI WILSON, W DAVID · 1996 to 1999
–
CELLULAR GENE PRODUCT MODULATES FLAVIVIRUS RNA SYNTHESISR22AI018382 · NIAID · WISTAR INSTITUTE · PI BRINTON, MARGO A · 1985 to 1985
–
NCI NIH HHS CA33572NCI NIH HHS P30 CA033572NIAID NIH HHS AI18382NIGMS NIH HHS GM54896
6 · The paper itself

Abstract

It was reported previously that four baby hamster kidney (BHK) proteins with molecular masses of 108, 60, 50, and 42 kDa bind specifically to the 3'-terminal stem-loop of the West Nile virus minus-stand RNA [WNV 3'(-) SL RNA] (P. Y. Shi, W. Li, and M. A. Brinton, J. Virol. 70:6278-6287, 1996). In this study, p42 was purified using an RNA affinity column and identified as TIAR by peptide sequencing. A 42-kDa UV-cross-linked viral RNA-cell protein complex formed in BHK cytoplasmic extracts incubated with the WNV 3'(-) SL RNA was immunoprecipitated by anti-TIAR antibody. Both TIAR and the closely related protein TIA-1 are members of the RNA recognition motif (RRM) family of RNA binding proteins. TIA-1 also binds to the WNV 3'(-) SL RNA. The specificity of these viral RNA-cell protein interactions was demonstrated using recombinant proteins in competition gel mobility shift assays. The binding site for the WNV 3'(-) SL RNA was mapped to RRM2 on both TIAR and TIA-1. However, the dissociation constant (K(d)) for the interaction between TIAR RRM2 and the WNV 3'(-) SL RNA was 1.5 x 10(-8), while that for TIA-1 RRM2 was 1.12 x 10(-7). WNV growth was less efficient in murine TIAR knockout cell lines than in control cells. This effect was not observed for two other types of RNA viruses or two types of DNA viruses. Reconstitution of the TIAR knockout cells with TIAR increased the efficiency of WNV growth, but neither the level of TIAR nor WNV replication was as high as in control cells. These data suggest a functional role for TIAR and possibly also for TIA-1 during WNV replication.

Indexed as

ProteinsAmino Acid SequenceAnimalsBase SequenceBinding SitesCell LineConserved SequenceCricetinaeDNA, ComplementaryEvolution, MolecularGene DeletionKineticsMembrane ProteinsMiceMolecular Sequence DataNucleic Acid ConformationDNA, ComplementaryMembrane ProteinsProteinsRNA-Binding ProteinsRNA, ComplementaryRNA, ViralT-Cell Intracellular Antigen-1Tia1 protein, mouseTial1 protein, mouse

Identifiers

PMID12414941
PMCPMC136884
OpenAlexW2003151628

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.