Evidence map›Paper›PMID 12414706›Full record

ArticleBiophysical journal2002

Conformational dynamics of the SH1-SH2 helix in the transition states of myosin subfragment-1.

Lisa K Nitao, Todd O Yeates, Emil Reisler

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In one paragraph

Article in Biophysical journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Lisa K NitaoDepartment of Chemistry and Biochemistry, Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA.
Todd O Yeates
Emil Reisler
University of California, Los Angeles · US

Funding

STRUCTURE/INTERACTIONS OF DNA COMPLEXES WITH ANTITUMOR DRUGS AND PROTEINSP01GM031299 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI YEATES, TODD O · 1985 to 2005
$7.6M
DYNAMIC EVENTS IN MYOSIN DURING CONTRACTION OF MUSCLER01AR022031 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REISLER, EMIL · 1986 to 2004
$2.5M
NIAMS NIH HHS AR 22031NIAMS NIH HHS R01 AR022031NIGMS NIH HHS GM 31299
6 · The paper itself

Abstract

The alpha-helix containing the thiols, SH1 (Cys-707) and SH2 (Cys-697), has been proposed to be one of the structural elements responsible for the transduction of conformational changes in the myosin head (subfragment-1 (S1)). Previous studies, using a method that isolated and measured the rate of the SH1-SH2 cross-linking step, showed that this helix undergoes ligand-induced conformational changes. However, because of long incubation times required for the formation of the transition state complexes (S1.ADP.BeF(x), S1.ADP.AlF(4)-, and S1.ADP.V(i)), this method could not be used to determine the cross-linking rate constants for such states. In this study, kinetic data from the SH1-SH2 cross-linking reaction were analyzed by computational methods to extract rate constants for the two-step mechanism. For S1.ADP.BeF(x), the results obtained were similar to those for S1.ATPgammaS. For reactions involving S1.ADP.AlF(4)- and S1.ADP.V(i), the first step (SH1 modification) is rate limiting; consequently, only lower limits could be established for the rate constants of the cross-linking step. Nevertheless, these results show that the cross-linking rate constants in the transition state complexes are increased at least 20-fold for all the reagents, including the shortest one, compared with nucleotide-free S1. Thus, the SH1-SH2 helix appears to be destabilized in the post-hydrolysis state.

Indexed as

Adenosine TriphosphatasesAnimalsBiophysical PhenomenaBiophysicsComputer SimulationDithionitrobenzoic AcidHydrolysisMusclesMyosinsMyosin SubfragmentsProtein BindingProtein ConformationProtein Structure, TertiaryRabbitsSoftwaresrc Homology DomainsAdenosine TriphosphatasesDithionitrobenzoic AcidMyosinsMyosin Subfragments

Identifiers

PMID12414706
PMCPMC1302358
OpenAlexW1998032049

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.