Evidence map›Paper›PMID 12414700›Full record

ArticleBiophysical journal2002

Translational diffusion of individual class II MHC membrane proteins in cells.

Marija Vrljic, Stefanie Y Nishimura, Sophie Brasselet, W E Moerner, Harden M McConnell

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 240 citations in OpenAlex.

  1. Article
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  16. Review
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  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Marija VrljicBiophysics Program, Stanford University, Stanford, CA 94305-5080, USA.
Stefanie Y Nishimura
Sophie Brasselet
W E Moerner
Harden M McConnell
Stanford University · US

Funding

IMMUNOLOGY AND BIOPHYSICS OF RECONSTITUTED MEMBRANESR01AI013587 · NIAID · STANFORD UNIVERSITY · PI MC CONNELL, HARDEN M · 1985 to 2002
$1.1M
NIAID NIH HHS 5R01 AI 13587-26
6 · The paper itself

Abstract

Single-molecule epifluorescence microscopy was used to observe the translational motion of GPI-linked and native I-E(k) class II MHC membrane proteins in the plasma membrane of CHO cells. The purpose of the study was to look for deviations from Brownian diffusion that might arise from barriers to this motion. Detergent extraction had suggested that these proteins may be confined to lipid microdomains in the plasma membrane. The individual I-E(k) proteins were visualized with a Cy5-labeled peptide that binds to a specific extracytoplasmic site common to both proteins. Single-molecule trajectories were used to compute a radial distribution of displacements, yielding average diffusion coefficients equal to 0.22 (GPI-linked I-E(k)) and 0.18 microm(2)/s (native I-E(k)). The relative diffusion of pairs of proteins was also studied for intermolecular separations in the range 0.3-1.0 microm, to distinguish between free diffusion of a protein molecule and diffusion of proteins restricted to a rapidly diffusing small domain. Both analyses show that motion is predominantly Brownian. This study finds no strong evidence for significant confinement of either GPI-linked or native I-E(k) in the plasma membrane of CHO cells.

Indexed as

ActinsAnimalsBiophysical PhenomenaBiophysicsCell MembraneCHO CellsCricetinaeCytoplasmCytoskeletonDetergentsDiffusionGenes, MHC Class IIMicroscopy, FluorescenceOxygenPeptide BiosynthesisPeptidesActinsDetergentsOxygenPeptidesProteinsTubulin

Identifiers

PMID12414700
PMCPMC1302352
OpenAlexW2024828365

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.