Evidence map›Paper›PMID 12411485›Full record

ArticleThe EMBO journal2002

Topology of polytopic membrane protein subdomains is dictated by membrane phospholipid composition.

Xiaoyuan Wang, Mikhail Bogdanov, William Dowhan

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Structure and function ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Review
  7. How bilayer properties influence membrane protein folding.Protein science : a publication of the Protein Society · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Dynamic membrane protein topological switching upon changes in phospholipid environment.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  16. Article
  17. Review
  18. In vitro reconstitution of lipid-dependent dual topology and postassembly topological switching of a membrane protein.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Xiaoyuan WangDepartment of Biochemistry and Molecular Biology, University of Texas-Houston, Medical School, 77225, USA.
Mikhail Bogdanov
William Dowhan
The University of Texas Health Science Center at Houston · US

Funding

Structure and Function in Membrane ProteinsR37GM020478 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DOWHAN, WILLIAM · 2005 to 2015
$5.4M
STRUCTURE/FUNCTION OF MEMBRANE PROTEINSR01GM020478 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DOWHAN, WILLIAM · 1985 to 2004
$1.8M
KARYOPHERIN X, A NOVEL TRANSPORT RECEPTORF32GM020478 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI PLAFKER, SCOTT M · 2000 to 2000
$38k
NIGMS NIH HHS F32 GM020478NIGMS NIH HHS GM-20478NIGMS NIH HHS R01 GM020478NIGMS NIH HHS R37 GM020478
6 · The paper itself

Abstract

In Escherichia coli, the major cytoplasmic domain (C6) of the polytopic membrane protein lactose permease (LacY) is exposed to the opposite side of the membrane from a neighboring periplasmic domain (P7). However, these domains are both exposed on the periplasmic side of the membrane in a mutant of E.coli lacking phosphatidylethanolamine (PE) wherein LacY only mediates facilitated transport. When purified LacY was reconstituted into liposomes lacking PE or phosphatidylcholine (PC), C6 and P7 were on the same side of the bilayer. In liposomes containing PE or PC, C6 and P7 were on opposite sides of the bilayer. Only the presence of PE in the liposomes restored active transport function of LacY as opposed to restoration of only facilitated transport function in the absence of PE. These results were the same for LacY purified from PE-containing or PE-lacking cells, and are consistent with the topology and function of LacY assembled in vivo. Therefore, irrespective of the mechanism of membrane insertion, the subdomain topological orientation and function of LacY are determined primarily by membrane phospholipid composition.

Indexed as

Escherichia coli ProteinsMonosaccharide Transport ProteinsSymportersEscherichia coliMembrane LipidsMembrane PotentialsMembrane Transport ProteinsPhospholipidsProteolipidsEscherichia coli Proteinslactose permeaseLacY protein, E coliMembrane LipidsMembrane Transport ProteinsMonosaccharide Transport ProteinsPhospholipidsProteolipidsproteoliposomesSymporters

Identifiers

PMID12411485
PMCPMC131068
OpenAlexW2047055618

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.