Evidence map›Paper›PMID 12406746›Full record

ArticleApplied and environmental microbiology2002

Construction of a shuttle vector for, and spheroplast transformation of, the hyperthermophilic archaeon Pyrococcus abyssi.

Soizick Lucas, Laurent Toffin, Yvan Zivanovic, Daniel Charlier, Hélène Moussard, Patrick Forterre, Daniel Prieur, Gaël Erauso

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Biotechnology of extremely thermophilic archaea.FEMS microbiology reviews · 2018
    Review
  6. Development of a pyrE-based selective system for Thermotoga sp. strain RQ7.Extremophiles : life under extreme conditions · 2017
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Overview of the genetic tools in the Archaea.Frontiers in microbiology · 2012
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Shuttle vector-based transformation system for Pyrococcus furiosus.Applied and environmental microbiology · 2010
    Article
  17. Thermus thermophilus as biological model.Extremophiles : life under extreme conditions · 2009
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Soizick LucasLEMAR, UMR CNRS 6539, IUEM, Université de Bretagne Occidentale, Technopôle Brest-Iroise, 29280 Plouzané Institut de Génétique et Microbiologie, Université Paris-Sud, 91405 Orsay Cedex, France.
Laurent Toffin
Yvan Zivanovic
Daniel Charlier
Hélène Moussard
Patrick Forterre
Daniel Prieur
Gaël Erauso

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our understanding of the genetics of species of the best-studied hyperthermophilic archaea, Pyrococcus spp., is presently limited by the lack of suitable genetic tools, such as a stable cloning vector and the ability to select individual transformants on plates. Here we describe the development of a reliable host-vector system for the hyperthermophilic archaeon Pyrococcus abyssi. Shuttle vectors were constructed based on the endogenous plasmid pGT5 from P. abyssi strain GE5 and the bacterial vector pLitmus38. As no antibiotic resistance marker is currently available for Pyrococcus spp., we generated a selectable auxotrophic marker. Uracil auxotrophs resistant to 5-fluoorotic acid were isolated from P. abyssi strain GE9 (devoid of pGT5). Genetic analysis of these mutants revealed mutations in the pyrE and/or pyrF genes, encoding key enzymes of the pyrimidine biosynthetic pathway. Two pyrE mutants exhibiting low reversion rates were retained for complementation experiments. For that purpose, the pyrE gene, encoding orotate phosphoribosyltransferase (OPRTase) of the thermoacidophilic crenarchaeote Sulfolobus acidocaldarius, was introduced into the pGT5-based vector, giving rise to pYS2. With a polyethylene glycol-spheroplast method, we could reproducibly transform P. abyssi GE9 pyrE mutants to prototrophy, though with low frequency (10(2) to 10(3) transformants per micro g of pYS2 plasmid DNA). Transformants did grow as well as the wild type on minimal medium without uracil and showed comparable OPRTase activity. Vector pYS2 proved to be very stable and was maintained at high copy number under selective conditions in both Escherichia coli and P. abyssi.

Indexed as

BH3 Interacting Domain Death Agonist ProteinCarrier ProteinsGenetic MarkersGenetic VectorsMutationPlasmidsPolyethylene GlycolsPyrococcusSpheroplastsUracilBH3 Interacting Domain Death Agonist ProteinCarrier ProteinsGenetic MarkersPolyethylene GlycolsUracil

Identifiers

PMID12406746
PMCPMC129897

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.