Evidence map›Paper›PMID 12403470›Full record

ArticleRNA (New York, N.Y.)2002

PSF and p54nrb bind a conserved stem in U5 snRNA.

Rui Peng, Billy T Dye, Ismael Pérez, Daron C Barnard, Amanda B Thompson, James G Patton

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 141 citations in OpenAlex.

  1. Article
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  15. RNA-Binding Proteins in Pulmonary Hypertension.International journal of molecular sciences · 2020
    Review
  16. NONO and tumorigenesis: More than splicing.Journal of cellular and molecular medicine · 2020
    Review
  17. Article
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  19. Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Rui PengDepartment of Biological Sciences, Vanderbilt University, Nashville, Tennessee 37235, USA.
Billy T Dye
Ismael Pérez
Daron C Barnard
Amanda B Thompson
James G Patton
Vanderbilt University · USUniversity of Massachusetts Chan Medical School · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PTB-associated splicing factor (PSF) has been implicated in both early and late steps of pre-mRNA splicing, but its exact role in this process remains unclear. Here we show that PSF interacts with p54nrb, a highly related protein first identified based on cross-reactivity to antibodies against the yeast second-step splicing factor Prpl8. We performed RNA-binding experiments to determine the preferred RNA-binding sequences for PSF and p54nrb, both individually and in combination. In all cases, iterative selection assays identified a purine-rich sequence located on the 3' side of U5 snRNA stem 1b. Filter-binding assays and RNA affinity selection experiments demonstrated that PSF and p54nrb bind U5 snRNA with both the sequence and structure of stem 1b contributing to binding specificity. Sedimentation analyses show that both proteins associate with spliceosomes and with U4/U6.U5 tri-snPNP.

Indexed as

Nuclear Matrix-Associated ProteinsBase SequenceBinding SitesConserved SequenceCross ReactionsDNA-Binding ProteinsHeLa CellsHumansMolecular Sequence DataNuclear ProteinsNucleic Acid ConformationOctamer Transcription FactorsPTB-Associated Splicing FactorPurinesRecombinant ProteinsRibonucleoprotein, U4-U6 Small NuclearDNA-Binding ProteinsNONO protein, humanNuclear Matrix-Associated ProteinsNuclear ProteinsOctamer Transcription FactorsPRP18 protein, S cerevisiaePTB-Associated Splicing FactorpurinePurinesRecombinant ProteinsRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearRNA-Binding ProteinsRNA, Small NuclearSaccharomyces cerevisiae ProteinsU5 small nuclear RNA

Identifiers

PMID12403470
PMCPMC1370341
OpenAlexW2112094198

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.