Evidence map›Paper›PMID 12403466›Full record

ArticleRNA (New York, N.Y.)2002

Mutational analysis identifies two separable roles of the Saccharomyces cerevisiae splicing factor Prp18.

Dagmar Bacíková, David S Horowitz

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Exon sequences at the splice junctions affect splicing fidelity and alternative splicing.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Dagmar BacíkováDepartment of Biochemistry, Uniformed Services University of the Health Sciences, Bethesda, Maryland 20814, USA.
David S Horowitz
Uniformed Services University of the Health Sciences · US

Funding

BIOCHEMISTRY OF PREMRNA SPLICING FACTORSR01GM057267 · NIGMS · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI HOROWITZ, DAVID S · 1999 to 2004
$737k
NIGMS NIH HHS GM57267
6 · The paper itself

Abstract

Prp18 functions in the second step of pre-mRNA splicing, joining the spliceosome just prior to the transesterification reaction that creates the mature mRNA. Prp18 interacts with Slu7, and the functions of the two proteins are intertwined. Using the X-ray structure of Prp18, we have designed mutants in Prp18 that imply that Prp18 has two distinct roles in splicing. Deletion mutations were used to delineate the surface of Prp18 that interacts with Slu7, and point mutations in Prp18 were used to define amino acids that contact Slu7. Experiments in which Slu7 and mutant Prp18 proteins were expressed at different levels support a model in which interaction between the proteins is needed for stable binding of both proteins to the spliceosome. Mutations in an evolutionarily conserved region show that it is critical for Prp18 function but is not involved in binding Slu7. Alleles with mutations in the conserved region are dominant negative, suggesting that the resulting mutant prp18 proteins make proper contacts with the spliceosome, but fail to carry out a Prp18-specific function. Prp18 thus appears to have two separable roles in splicing, one in stabilizing interaction of Slu7 with the spliceosome, and a second that requires the conserved loop.

Indexed as

Nuclear ProteinsRNA SplicingAmino Acid SequenceConserved SequenceDNA Mutational AnalysisGene Expression Regulation, FungalMolecular Sequence DataProtein ConformationRibonucleoproteins, Small NuclearRibonucleoprotein, U5 Small NuclearRNA Splicing FactorsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence DeletionSequence Homology, Amino AcidNuclear ProteinsPRP18 protein, S cerevisiaeRibonucleoproteins, Small NuclearRibonucleoprotein, U5 Small NuclearRNA Splicing FactorsSaccharomyces cerevisiae ProteinsSLU7 protein, S cerevisiae

Identifiers

PMID12403466
PMCPMC1370337
OpenAlexW2112879302

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.