Evidence map›Paper›PMID 12399487›Full record

ArticleJournal of bacteriology2002

Poly-beta-hydroxybutyrate biosynthesis in the facultative methylotroph methylobacterium extorquens AM1: identification and mutation of gap11, gap20, and phaR.

Natalia Korotkova, Ludmila Chistoserdova, Mary E Lidstrom

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Exploitation of Biodiversity in Bioeconomy: Examples, Opportunities, and Challenges.Advances in biochemical engineering/biotechnology · 2025
    Review
  4. Biosynthesis of polyhydroxybutyrate byFrontiers in plant science · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Designing and EngineeringFrontiers in microbiology · 2019
    Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Demonstration of the ethylmalonyl-CoA pathway by using 13C metabolomics.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Natalia KorotkovaDepartment of Chemical Engineering, University of Washington, Seattle 98195-1750, USA.
Ludmila Chistoserdova
Mary E Lidstrom
University of Washington · US

Funding

Integrated Metabolism in Methylobacterium extroquens AM1R01GM058933 · NIGMS · UNIVERSITY OF WASHINGTON · PI LIDSTROM, MARY E · 1999 to 2010
$3.1M
NIGMS NIH HHS GM58933NIGMS NIH HHS R01 GM058933
6 · The paper itself

Abstract

Methylobacterium extorquens AM1, a serine cycle facultative methylotroph, accumulates poly-beta-hydroxybutyrate (PHB) as a carbon and energy reserve material during growth on both multicarbon- and single-carbon substrates. Recently, the identification and mutation of the genes involved in the biosynthesis and degradation of PHB have been described for this bacterium, demonstrating that two of the genes of the PHB cycle (phaA and phaB) are also involved in C(1) and C(2) metabolism, as part of a novel pathway for glyoxylate regeneration in the serine cycle (N. Korotkova and M. E. Lidstrom, J. Bacteriol. 183:1038-1046, 2001; N. Korotkova, L. Chistoserdova, V. Kuksa, and M. E. Lidstrom, J. Bacteriol. 184:1750-1758, 2002). In this work, three new genes involved in PHB biosynthesis in this bacterium have been investigated via mutation and phenotypic analysis: gap11, gap20, and phaR. We demonstrate that gap11 and gap20 encode two major granule-associated proteins (phasins) and that mutants with mutations in these genes are defective in PHB production and also in growth on C(2) compounds, while they show wild-type growth characteristics on C(1) or multicarbon compounds. The phaR mutant shows defects in both PHB accumulation and growth characteristics when grown on C(1) compounds and has defects in PHB accumulation but grows normally on C(3) and C(4) compounds, while both PHB accumulation and growth rate are at wild-type levels during growth on C(2) compounds. Our results suggest that this phenotype is due to altered fluxes of acetyl coenzyme A (CoA), a major intermediate in C(1), C(2), and heterotrophic metabolism in M. extorquens AM1, as well as the entry metabolite for the PHB cycle. Therefore, it seems likely that PhaR acts to control acetyl-CoA flux to PHB in this methylotrophic bacterium.

Indexed as

MutationAcetyl Coenzyme ABacterial ProteinsCulture MediaDNA, BacterialDNA-Binding ProteinsGene Expression Regulation, BacterialHydroxybutyratesMethanolMethylobacterium extorquensMolecular Sequence DataMutagenesis, Site-DirectedPolyestersPolyhydroxybutyratesRepressor ProteinsSequence Analysis, DNAAcetyl Coenzyme ABacterial ProteinsCulture MediaDNA, BacterialDNA-Binding ProteinsHydroxybutyratesMethanolpoly-beta-hydroxybutyratePolyestersPolyhydroxybutyratesRepressor ProteinsSuccinic Acid

Identifiers

PMID12399487
PMCPMC151960
OpenAlexW2160179211

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.