Evidence map›Paper›PMID 12388677›Full record

ArticleJournal of virology2002

Nucleic acid-independent retrovirus assembly can be driven by dimerization.

Marc C Johnson, Heather M Scobie, Yu May Ma, Volker M Vogt

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
11.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 105 citations in OpenAlex.

  1. Review
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  7. Length of encapsidated cargo impacts stability and structure of in vitro assembled alphavirus core-like particles.Journal of physics. Condensed matter : an Institute of Physics journal · 2017
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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Marc C JohnsonDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA. mcj7@cornell.edu
Heather M Scobie
Yu May Ma
Volker M Vogt
Cornell University · US

Funding

AVIAN RETROVIRUS STRUCTURE AND ASSEMBLYR01CA020081 · NCI · CORNELL UNIVERSITY ITHACA · PI VOGT, VOLKER M. · 1985 to 2011
$3.9M
AVIAN RETROVIRUS STRUCTURE AND ASSEMBLYR37CA020081 · NCI · CORNELL UNIVERSITY ITHACA · PI VOGT, VOLKER M. · 1988 to 1995
–
NCI NIH HHS CA20081NCI NIH HHS R01 CA020081
6 · The paper itself

Abstract

The Gag protein of retroviruses alone can polymerize into regular virus-like particles (VLPs) both in vitro and in vivo. In most circumstances the capsid (CA) and nucleocapsid (NC) domains of Gag as well as some form of nucleic acid are required for this process. The mechanism by which NC-nucleic acid interaction promotes assembly has remained obscure. We show here that while deletion of the NC domain of Rous sarcoma virus Gag abolishes formation and budding of VLPs at the plasma membranes of baculovirus-infected insect cells, replacement of NC with a dimer-forming leucine zipper domain restores budding of spherical particles morphologically similar to wild-type VLPs. The positioning of the dimerization domain appears to be critical for proper assembly, as the insertion of a 5-amino-acid flexible linker upstream of the zipper domain leads to budding of tubular rather than spherical particles. Similar tubular particles are formed when the same linker is inserted upstream of NC. The tubes are morphologically distinct from tubes formed when the p10 domain upstream of CA is deleted. The fact that a foreign dimerization domain can functionally mimic NC suggests that the role of nucleic acid in retroviral assembly is not to serve as a scaffold but rather to promote the formation of Gag dimers, which are critical intermediates in the polymerization of the Gag shell.

Indexed as

Virus AssemblyAnimalsAvian Sarcoma VirusesBaculoviridaeCells, CulturedDimerizationGene Products, gagGenetic VectorsLeucine ZippersMicroscopy, Electron, ScanningNucleic AcidsSpodopteraVirionGene Products, gagNucleic Acids

Identifiers

PMID12388677
PMCPMC136745
OpenAlexW2079470888

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.