Evidence map›Paper›PMID 12379712›Full record

ArticleInfection and immunity2002

In situ detection of Mycobacterium tuberculosis transcripts in human lung granulomas reveals differential gene expression in necrotic lesions.

Gael Fenhalls, Liesel Stevens, Lorraine Moses, Juanita Bezuidenhout, Joanna C Betts, Paul van Helden Pv, Pauline T Lukey, Ken Duncan

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 163 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Tuberculosis: The success tale of less explored dormantFrontiers in cellular and infection microbiology · 2022
    Review
  5. Review
  6. International journal of molecular sciences · 2021
    Article
  7. Review
  8. A Role forInternational journal of molecular sciences · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Pathogens (Basel, Switzerland) · 2020
    Article
  13. Metabolic Switching ofJournal of bacteriology · 2020
    Article
  14. Review
  15. Review
  16. Article
  17. Microbiology spectrum · 2019
    Review
  18. Observational
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Gael FenhallsMRC Center for Molecular and Cellular Biology, Department of Medical Biochemistry, University of Stellenbosch Medical School, Cape Town, South Africa. gfen@sun.ac.za
Liesel Stevens
Lorraine Moses
Juanita Bezuidenhout
Joanna C Betts
Paul van Helden Pv
Pauline T Lukey
Ken Duncan
GlaxoSmithKline (United Kingdom) · GBStellenbosch University · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have used RNA-RNA in situ hybridization to detect the expression of several Mycobacterium tuberculosis genes in tuberculous granulomas in lung tissue sections from tuberculosis patients. The M. tuberculosis genes chosen fall into two classes. Four genes (icl, narX, and Rv2557 and Rv2558) have been implicated in the persistence of the bacterium in the host, and two genes (iniB and kasA) are upregulated in response to isoniazid exposure. Both necrotic and nonnecrotic granulomas were identified in all of the patients. Necrotic granulomas were divided into three zones: an outer lymphocyte cuff containing lymphocytes and macrophages, a transition zone consisting of necrotic material interspersed with macrophages, and a central acellular necrotic region. Transcripts of all of the genes studied were found in nonnecrotic granulomas and in the lymphocyte cuff of necrotic granulomas. Mycobacterial gene expression was associated with CD68-positive myeloid cells. Rv2557 and/or its homologue Rv2558, kasA, and iniB were expressed within the transition zone of necrotic granulomas, whereas icl and narX transcripts were absent from this area. There was no evidence of transcription of any of the genes examined in the central necrotic region, although mycobacterial DNA was present. The differential expression of genes within granulomas demonstrates that M. tuberculosis exists in a variety of metabolic states and may be indicative of the response to different microenvironments. These observations confirm that genes identified in models of persistence or in response to drug treatment in vitro are expressed in the human host.

Indexed as

Gene Expression ProfilingAdolescentAdultAntigens, CDAntigens, Differentiation, MyelomonocyticCD68 MoleculeFemaleGranuloma, Respiratory TractHumansIn Situ HybridizationMaleMycobacterium tuberculosisNecrosisRNA, MessengerTuberculosis, PulmonaryAntigens, CDAntigens, Differentiation, MyelomonocyticCD68 antigen, humanCD68 MoleculeRNA, Messenger

Identifiers

PMID12379712
PMCPMC130373
OpenAlexW2126227426

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.