Evidence map›Paper›PMID 12374828›Full record

ArticleJournal of bacteriology2002

Vibrio parahaemolyticus scrABC, a novel operon affecting swarming and capsular polysaccharide regulation.

Blaise R Boles, Linda L McCarter

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 142 citations in OpenAlex.

  1. Article
  2. AphA-dependent c-di-GMP production inJournal of bacteriology · 2025
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  19. Article
  20. The role of solute binding proteins in signal transduction.Computational and structural biotechnology journal · 2021
    Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Blaise R BolesDepartment of Microbiology, The University of Iowa, Iowa City, IA 52242, USA.
Linda L McCarter
University of Iowa · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Swarming is an adaptation of many bacteria to growth on surfaces. A search for genes controlling swarmer cell differentiation of Vibrio parahaemolyticus identified a novel three-gene operon that potentially encodes a pyridoxal-phosphate-dependent enzyme, an extracellular solute-binding protein, and a membrane-bound GGDEF- and EAL-motif sensory protein. The functions of these motifs, which are named after conserved amino acid sequences, are unknown, although the domains are found singly and in combination in a variety of bacterial signaling proteins. Studies with translational fusions supported the predicted localization of the gene products. When the operon was overexpressed, swarmer cell gene transcription was induced in liquid culture. Mutants with defects in any of the three genes exhibited decreased swarming and lateral flagellar (laf) gene expression. Complementation studies confirmed an operon organization and suggested that all three genes participated in laf regulation. The lesions that decreased swarming increased capsular polysaccharide (CPS) production, and overexpression of the operon inhibited transcription of the CPS gene cpsA. Thus, the scrABC locus appears to inversely regulate two gene systems that are pertinent to colonization of surface swarming and CPS.

Indexed as

Gene Expression Regulation, BacterialATP-Binding Cassette TransportersBacterial CapsulesBacterial Proteinsbeta-FructofuranosidaseCarboxypeptidasesFlagellaGenes, ReporterGlycoside HydrolasesLac OperonOperonPhosphoenolpyruvate Sugar Phosphotransferase SystemTransaminasesVibrio parahaemolyticusATP-Binding Cassette TransportersBacterial Proteinsbeta-FructofuranosidaseCarboxypeptidasesCpsA protein, Sulfolobus solfataricusGlycoside Hydrolaseshook protein, bacterial flagellumphosphoenolpyruvate-sucrose phosphotransferasePhosphoenolpyruvate Sugar Phosphotransferase SystemTransaminases

Identifiers

PMID12374828
PMCPMC135390
OpenAlexW2167989899

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.