Evidence map›Paper›PMID 12370817›Full record

ArticleOncogene2002

Identification of Src transformation fingerprint in human colon cancer.

Renae L Malek, Rosalyn B Irby, Qingbin M Guo, Kerry Lee, Sylvia Wong, Mei He, Jennifer Tsai, Bryan Frank, Edison T Liu, John Quackenbush and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. DNA methylation in lung tissues of mouse offspring exposed in utero to polycyclic aromatic hydrocarbons.Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association · 2017
    Article
  9. Article
  10. Lentivirus-mediated TPD52L2 depletion inhibits the proliferation of liver cancer cells in vitro.International journal of clinical and experimental medicine · 2015
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Common PIK3CA mutants and a novel 3' UTR mutation are associated with increased sensitivity to saracatinib.Clinical cancer research : an official journal of the American Association for Cancer Research · 2012
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Targeting cytoskeleton reorganisation as antimetastatic treatment.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Renae L MalekDepartment of Functional Genomics, The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, Maryland, MD 20850, USA.
Rosalyn B Irby
Qingbin M Guo
Kerry Lee
Sylvia Wong
Mei He
Jennifer Tsai
Bryan Frank
Edison T Liu
John Quackenbush
Richard Jove
Timothy J Yeatman
Norman H Lee
Florida College · USNational Cancer Institute · USMoffitt Cancer Center · US

Funding

DECODING FINGERPRINTS PORTENDING COLON CANCER METASTASISU01CA085052 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI YEATMAN, TIMOTHY J · 2000 to 2004
$5.4M
SRC AS A NOVEL TARGET FOR HUMAN COLON CANCER THERAPYK24CA085429 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI YEATMAN, TIMOTHY J · 2000 to 2004
$581k
MAGE--MOLECULAR ANALYSIS OF GENE EXPRESSIONR01CA077049 · NCI · INSTITUTE FOR GENOMIC RESEARCH · PI QUACKENBUSH, JOHN · 1997 to 1998
–
GENERATION OF A RAT EST (REST) CATALOGR01HL059781 · NHLBI · INSTITUTE FOR GENOMIC RESEARCH · PI LEE, NORMAN H · 1997 to 1998
–
NCI NIH HHS CA77049-02NCI NIH HHS CA85052-A1NCI NIH HHS CA85429-01NHLBI NIH HHS HL59781PHS HHS 6120-119-L0-A
6 · The paper itself

Abstract

We used a classical rodent model of transformation to understand the transcriptional processes, and hence the molecular and cellular events a given cell undergoes when progressing from a normal to a transformed phenotype. Src activation is evident in 80% of human colon cancer, yet the myriad of cellular processes effected at the level of gene expression has yet to be fully documented. We identified a Src 'transformation fingerprint' within the gene expression profiles of Src-transformed rat 3Y1 fibroblasts demonstrating a progression in transformation characteristics. To evaluate the role of this gene set in human cancer development and progression, we extracted the orthologous genes present on the Affymetrix Hu95A GeneChip (12k named genes) and compared expression profiles between the Src-induced rodent cell line model of transformation and staged colon tumors where Src is known to be activated. A similar gene expression pattern between the cell line model and staged colon tumors for components of the cell cycle, cytoskeletal associated proteins, transcription factors and lysosomal proteins suggests the need for co-regulation of several cellular processes in the progression of cancer. Genes not previously implicated in tumorigenesis were detected, as well as a set of 14 novel, highly conserved genes with here-to-fore unknown function. These studies define a set of transformation associated genes whose up-regulation has implications for understanding Src mediated transformation and strengthens the role of Src in the development and progression of human colon cancer. Supportive Supplemental Data can be viewed at http://pga.tigr.org/PGApubs.shtml.

Indexed as

Cell Transformation, NeoplasticGenes, srcAnimalsCell Line, TransformedCluster AnalysisColonic NeoplasmsGene Expression ProfilingGene Expression Regulation, NeoplasticHumansPyridonesPyrimidinesRatsReverse Transcriptase Polymerase Chain ReactionUp-RegulationPD 180970PyridonesPyrimidines

Identifiers

PMID12370817
OpenAlexW2004903465

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.