Evidence map›Paper›PMID 12368864›Full record

ArticleNature2002

Genome sequence of the human malaria parasite Plasmodium falciparum.

Malcolm J Gardner, Neil Hall, Eula Fung, Owen White, Matthew Berriman, Richard W Hyman, Jane M Carlton, Arnab Pain, Karen E Nelson, Sharen Bowman and 35 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,879 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,879citing papers in PubMed, 1 pooled it
263.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,879 citing papers in PubMed, 1 synthesis or guideline pooled it, 4,459 citations in OpenAlex.

  1. Phosphorylation in theJournal of proteome research · 2024
    Pooled it
  2. Trial
  3. Trial
  4. Article
  5. Review
  6. Review
  7. Article
  8. Semi-synthesis of the C-terminal region ofRSC chemical biology · 2026
    Article
  9. Review
  10. Article
  11. N8-Modified Quino[4,3,2-Kl]acridines as Promising Antimalarial G-Quadruplex Ligands.Chembiochem : a European journal of chemical biology · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Toward an Open Analysis Ecosystem for Plasmodium Genomic Epidemiology.The American journal of tropical medicine and hygiene · 2026
    Article
  17. Article
  18. Article
  19. Article
  20. Article

1,819 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

45 authors at 2 institutions in 2 countries.

Malcolm J GardnerThe Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA. gardner@tigr.org
Neil Hall
Eula Fung
Owen White
Matthew Berriman
Richard W Hyman
Jane M Carlton
Arnab Pain
Karen E Nelson
Sharen Bowman
Ian T Paulsen
Keith James
Jonathan A Eisen
Kim Rutherford
Steven L Salzberg
Alister Craig
Sue Kyes
Man-Suen Chan
Vishvanath Nene
Shamira J Shallom
Bernard Suh
Jeremy Peterson
Sam Angiuoli
Mihaela Pertea
Jonathan Allen
Jeremy Selengut
Daniel Haft
Michael W Mather
Akhil B Vaidya
David M A Martin
Alan H Fairlamb
Martin J Fraunholz
David S Roos
Stuart A Ralph
Geoffrey I McFadden
Leda M Cummings
G Mani Subramanian
Chris Mungall
J Craig Venter
Daniel J Carucci
Stephen L Hoffman
Chris Newbold
Ronald W Davis
Claire M Fraser
Bart Barrell
J. Craig Venter Institute · USCenter for Genomic Science · IT

Funding

ORGANELLE GENOMES OF MALARIAL PARASITESR01AI028398 · NIAID · MCP HAHNEMANN UNIVERSITY · PI AKHIL B VAIDYA · 1989 to 2026
$10.1M
SEQUENCE ANALYSIS OF P FALCIPARUM CHROMOSOMES 9 AND 10U01AI042243 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI GARDNER, MALCOLM JOHN · 2000 to 2000
$781k
NIAID NIH HHS R01 AI028398Wellcome Trust 061524
6 · The paper itself

Abstract

The parasite Plasmodium falciparum is responsible for hundreds of millions of cases of malaria, and kills more than one million African children annually. Here we report an analysis of the genome sequence of P. falciparum clone 3D7. The 23-megabase nuclear genome consists of 14 chromosomes, encodes about 5,300 genes, and is the most (A + T)-rich genome sequenced to date. Genes involved in antigenic variation are concentrated in the subtelomeric regions of the chromosomes. Compared to the genomes of free-living eukaryotic microbes, the genome of this intracellular parasite encodes fewer enzymes and transporters, but a large proportion of genes are devoted to immune evasion and host-parasite interactions. Many nuclear-encoded proteins are targeted to the apicoplast, an organelle involved in fatty-acid and isoprenoid metabolism. The genome sequence provides the foundation for future studies of this organism, and is being exploited in the search for new drugs and vaccines to fight malaria.

Indexed as

Genome, ProtozoanAnimalsChromosome StructuresDNA, ProtozoanDNA RepairDNA ReplicationEvolution, MolecularHumansMalaria, FalciparumMalaria VaccinesMembrane Transport ProteinsMolecular Sequence DataPlasmodium falciparumPlastidsProteomeProtozoan ProteinsDNA, ProtozoanMalaria VaccinesMembrane Transport ProteinsProteomeProtozoan Proteins

Identifiers

PMID12368864
PMCPMC3836256
OpenAlexW2019851585

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.