Evidence map›Paper›PMID 12368330›Full record

ArticleJournal of virology2002

Optimized chimeras between kinase-inactive mutant Cdk9 and truncated cyclin T1 proteins efficiently inhibit Tat transactivation and human immunodeficiency virus gene expression.

Koh Fujinaga, Dan Irwin, Matthias Geyer, B Matija Peterlin

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.4field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. P-TEFb goes viral.Inside the cell · 2016
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
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  10. Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Koh FujinagaDepartment of Medicine, University of California at San Francisco, San Francisco, California 94143-0703, USA.
Dan Irwin
Matthias Geyer
B Matija Peterlin
University of California, San Francisco · US

Funding

TAT TransactivationR01AI049104 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PETERLIN, BORIS MATIJA · 2001 to 2015
$5.3M
NIAID NIH HHS R01 AI049104NIAID NIH HHS R01 AI49104-01NIAID NIH HHS TG AI2441-11
6 · The paper itself

Abstract

The human cyclin T1 (hCycT1) protein from the positive transcription elongation factor b (P-TEFb) binds the transactivator Tat and the transactivation response (TAR) RNA stem loop from human immunodeficiency virus type 1 (HIV). This complex activates the elongation of viral transcription. To create effective inhibitors of Tat and thus HIV replication, we constructed mutant hCycT1 proteins that are defective in binding its kinase partner, Cdk9, or TAR. Although these mutant hCycT1 proteins did not increase Tat transactivation in murine cells, their dominant-negative effects were small in human cells. Higher inhibitory effects were obtained when hCycT1 was fused with the mutant Cdk9 protein. Since the autophosphorylation of the C terminus of Cdk9 is required for the formation of the stable complex between P-TEFb, Tat, and TAR, these serines and threonines were changed to glutamate in a kinase-inactive Cdk9 protein. This chimera inhibited Tat transactivation and HIV gene expression in human cells. Therefore, this dominant-negative kinase-inactive mutant Cdk9.hCycT1 chimera could be used for antiviral gene therapy.

Indexed as

Gene Expression Regulation, ViralTranscriptional Activation3T3 CellsAnimalsChlorocebus aethiopsCOS CellsCyclin-Dependent Kinase 9Cyclin-Dependent KinasesCyclinsCyclin TGene Products, tatHIV-1HIV Long Terminal RepeatMiceMutagenesisPositive Transcriptional Elongation Factor BCCNT1 protein, humanCcnt1 protein, mouseCdk9 protein, mouseCyclin-Dependent Kinase 9Cyclin-Dependent KinasesCyclinsCyclin TGene Products, tatPositive Transcriptional Elongation Factor BProtein Serine-Threonine KinasesRecombinant Fusion Proteinstat Gene Products, Human Immunodeficiency Virus

Identifiers

PMID12368330
PMCPMC136629
OpenAlexW2169114099

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.