Evidence map›Paper›PMID 12364595›Full record

ArticleNucleic acids research2002

Reconstitution of the signal recognition particle of the halophilic archaeon Haloferax volcanii.

Irit Tozik, Qiaojia Huang, Christian Zwieb, Jerry Eichler

Abstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Archaeal cell surface biogenesis.FEMS microbiology reviews · 2018
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Protein transport across and into cell membranes in bacteria and archaea.Cellular and molecular life sciences : CMLS · 2010
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. The archaeal Sec-dependent protein translocation pathway.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2004
    Review
  18. The archaeal signal recognition particle: steps toward membrane binding.Journal of bioenergetics and biomembranes · 2004
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Irit TozikDepartment of Life Sciences, Ben Gurion University of the Negev, PO Box 653, Beersheva 84105, Israel.
Qiaojia Huang
Christian Zwieb
Jerry Eichler
Ben-Gurion University of the Negev · IL

Funding

STRUCTURE/FUNCTION OF SRP RNAR01GM049034 · NIGMS · UNIVERSITY OF TEXAS HLTH CTR AT TYLER · PI ZWIEB, CHRISTIAN WOLFGANG · 1995 to 2006
$1.2M
NIGMS NIH HHS GM-49034NIGMS NIH HHS R01 GM049034
6 · The paper itself

Abstract

The signal recognition particle (SRP) is a ribonucleoprotein complex involved in the recognition and targeting of nascent extracytoplasmic proteins in all three domains of life. In Archaea, SRP contains 7S RNA like its eukaryal counterpart, yet only includes two of the six protein subunits found in the eukaryal complex. To further our understanding of the archaeal SRP, 7S RNA, SRP19 and SRP54 of the halophilic archaeon Haloferax volcanii have been expressed and purified, and used to reconstitute the ternary SRP complex. The availability of SRP components from a haloarchaeon offers insight into the structure, assembly and function of this ribonucleoprotein complex at saturating salt conditions. While the amino acid sequences of H.volcanii SRP19 and SRP54 are modified presumably as an adaptation to their saline surroundings, the interactions between these halophilic SRP components and SRP RNA appear conserved, with the possibility of a few exceptions. Indeed, the H.volcanii SRP can assemble in the absence of high salt. As reported with other archaeal SRPs, the limited binding of H.volcanii SRP54 to SRP RNA is enhanced in the presence of SRP19. Finally, immunolocalization reveals that H.volcanii SRP54 is found in the cytosolic fraction, where it is associated with the ribosomal fraction of the cell.

Indexed as

Saccharomyces cerevisiae ProteinsAmino Acid SequenceBase SequenceHaloferax volcaniiImmunoblottingMolecular Sequence DataNucleic Acid ConformationRibonucleoproteinsRNA, ArchaealSequence Homology, Amino AcidSignal Recognition ParticleRibonucleoproteinsRNA, ArchaealSaccharomyces cerevisiae ProteinsSignal Recognition ParticleSRP19 protein, humanSRP54 protein, S cerevisiae

Identifiers

PMID12364595
PMCPMC140548
OpenAlexW2121235059

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.