Evidence map›Paper›PMID 12358429›Full record

ArticleRNA (New York, N.Y.)2002

Splicing and transcription-associated proteins PSF and p54nrb/nonO bind to the RNA polymerase II CTD.

Andrew Emili, Michael Shales, Susan McCracken, Weijun Xie, Philip W Tucker, Ryuji Kobayashi, Benjamin J Blencowe, C James Ingles

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 1 synthesis or guideline pooled it, 214 citations in OpenAlex.

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  20. RNA-binding proteins regulating the CD44 alternative splicing.Frontiers in molecular biosciences · 2023
    Review

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Andrew EmiliBanting and Best Department of Medical Research, C.H. Best Institute, University of Toronto, Ontario, Canada.
Michael Shales
Susan McCracken
Weijun Xie
Philip W Tucker
Ryuji Kobayashi
Benjamin J Blencowe
C James Ingles
University of Toronto · CAThe University of Texas at Austin · USThe University of Texas MD Anderson Cancer Center · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
HEAVY CHAIN GENE ORGANIZATION IN TRANSFORMED B LYMPHOCYTR37AI018016 · NIAID · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI TUCKER, PHILIP W. · 1992 to 2001
$745k
HEAVY CHAIN GENE ORGANIZATION--TRANSFORMED B LYMPHOCYTESR01AI018016 · NIAID · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI TUCKER, PHILIP W. · 1985 to 1991
–
NCI NIH HHS CA45508NIAID NIH HHS AI18016
6 · The paper itself

Abstract

The carboxyl-terminal domain (CTD) of the largest subunit of eukaryotic RNA polymerase II (pol II) plays an important role in promoting steps of pre-mRNA processing. To identify proteins in human cells that bind to the CTD and that could mediate its functions in pre-mRNA processing, we used the mouse CTD expressed in bacterial cells in affinity chromatography experiments. Two proteins present in HeLa cell extract, the splicing and transcription-associated factors, PSF and p54nrb/NonO, bound specifically and could be purified to virtual homogeneity by chromatography on immobilized CTD matrices. Both hypo- and hyperphosphorylated CTD matrices bound these proteins with similar selectivity. PSF and p54nrb/NonO also copurified with a holoenzyme form of pol II containing hypophosphorylated CTD and could be coimmunoprecipitated with antibodies specific for this and the hyperphosphorylated form of pol II. That PSF and p54nrb/NonO promoted the binding of RNA to immobilized CTD matrices suggested these proteins can interact with the CTD and RNA simultaneously. PSF and p54nrb/NonO may therefore provide a direct physical link between the pol II CTD and pre-mRNA processing components, at both the initiation and elongation phases of transcription.

Indexed as

Nuclear Matrix-Associated ProteinsAmino Acid SequenceAnimalsBinding SitesDNA-Binding ProteinsHeLa CellsHoloenzymesHumansIn Vitro TechniquesMiceMolecular Sequence DataNuclear ProteinsOctamer Transcription FactorsPhosphorylationProtein Structure, TertiaryPTB-Associated Splicing FactorDNA-Binding ProteinsHoloenzymesNONO protein, humanNuclear Matrix-Associated ProteinsNuclear ProteinsOctamer Transcription FactorsPTB-Associated Splicing FactorRecombinant ProteinsRNA-Binding ProteinsRNA Polymerase IIRNA Precursors

Identifiers

PMID12358429
PMCPMC1370324
OpenAlexW2115521704

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.