Evidence map›Paper›PMID 12356743›Full record

ArticleThe EMBO journal2002

Co-localization of centromere activity, proteins and topoisomerase II within a subdomain of the major human X alpha-satellite array.

Jennifer M Spence, Ricky Critcher, Thomas A Ebersole, Manuel M Valdivia, William C Earnshaw, Tatsuo Fukagawa, Christine J Farr

Abstract read
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed.

  1. Article
  2. Centromere Identity and the Regulation of Chromosome Segregation.Frontiers in cell and developmental biology · 2022
    Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Satellite DNAs are conserved and differentially transcribed among Gryllus cricket species.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018
    Article
  8. Site-Specific Cleavage by Topoisomerase 2: A Mark of the Core Centromere.International journal of molecular sciences · 2018
    Article
  9. Non-Catalytic Roles of the Topoisomerase IIα C-Terminal Domain.International journal of molecular sciences · 2017
    Review
  10. Article
  11. The molecular basis for centromere identity and function.Nature reviews. Molecular cell biology · 2016
    Review
  12. Article
  13. Review
  14. Evolutionary origin of higher-order repeat structure in alpha-satellite DNA of primate centromeres.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Human artificial chromosome (HAC) vector with a conditional centromere for correction of genetic deficiencies in human cells.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  20. Human artificial chromosomes for gene delivery and the development of animal models.Molecular therapy : the journal of the American Society of Gene Therapy · 2011
    Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jennifer M SpenceDepartment of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK.
Ricky Critcher
Thomas A Ebersole
Manuel M Valdivia
William C Earnshaw
Tatsuo Fukagawa
Christine J Farr

Funding

Wellcome Trust 073915
6 · The paper itself

Abstract

Dissection of human centromeres is difficult because of the lack of landmarks within highly repeated DNA. We have systematically manipulated a single human X centromere generating a large series of deletion derivatives, which have been examined at four levels: linear DNA structure; the distribution of constitutive centromere proteins; topoisomerase IIalpha cleavage activity; and mitotic stability. We have determined that the human X major alpha-satellite locus, DXZ1, is asymmetrically organized with an active subdomain anchored approximately 150 kb in from the Xp-edge. We demonstrate a major site of topoisomerase II cleavage within this domain that can shift if juxtaposed with a telomere, suggesting that this enzyme recognizes an epigenetic determinant within the DXZ1 chromatin. The observation that the only part of the DXZ1 locus shared by all deletion derivatives is a highly restricted region of <50 kb, which coincides with the topo isomerase II cleavage site, together with the high levels of cleavage detected, identify topoisomerase II as a major player in centromere biology.

Indexed as

Antigens, NeoplasmBase SequenceCell LineCentromereChromosome MappingChromosomes, Human, XDNA-Binding ProteinsDNA PrimersDNA Topoisomerases, Type IIHumansIn Situ Hybridization, FluorescenceOligonucleotide Array Sequence AnalysisPolymerase Chain ReactionRestriction MappingTransfectionAntigens, NeoplasmDNA-Binding ProteinsDNA PrimersDNA Topoisomerases, Type II

Identifiers

PMID12356743
PMCPMC129033

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.